@prefix : . @prefix owl: . @prefix rdf: . @prefix xml: . @prefix xsd: . @prefix rdfs: . @base . rdf:type owl:Ontology ; owl:versionIRI ; "1.2"^^xsd:string . ################################################################# # Annotation properties ################################################################# ### http://purl.obolibrary.org/obo/IAO_0000115 rdf:type owl:AnnotationProperty ; rdfs:label "definition"^^xsd:string . ### http://purl.obolibrary.org/obo/IAO_0000231 rdf:type owl:AnnotationProperty . ### http://purl.obolibrary.org/obo/IAO_0000589 rdf:type owl:AnnotationProperty . ### http://purl.obolibrary.org/obo/IAO_0100001 rdf:type owl:AnnotationProperty . ### http://purl.obolibrary.org/obo/go-test#goantislim_grouping rdfs:comment "Grouping classes that can be excluded"^^xsd:string ; rdf:type owl:AnnotationProperty ; rdfs:subPropertyOf . ### http://purl.obolibrary.org/obo/go-test#gocheck_do_not_annotate rdfs:comment "Term not to be used for direct annotation"^^xsd:string ; rdf:type owl:AnnotationProperty ; rdfs:subPropertyOf . ### http://purl.obolibrary.org/obo/go-test#gocheck_do_not_manually_annotate rdfs:comment "Term not to be used for direct manual annotation"^^xsd:string ; rdf:type owl:AnnotationProperty ; rdfs:subPropertyOf . ### http://purl.obolibrary.org/obo/go-test#goslim_aspergillus rdfs:comment "Aspergillus GO slim"^^xsd:string ; rdf:type owl:AnnotationProperty ; rdfs:subPropertyOf . ### http://purl.obolibrary.org/obo/go-test#goslim_candida rdfs:comment "Candida GO slim"^^xsd:string ; rdf:type owl:AnnotationProperty ; rdfs:subPropertyOf . ### http://purl.obolibrary.org/obo/go-test#goslim_chembl rdfs:comment "ChEMBL protein targets summary"^^xsd:string ; rdf:type owl:AnnotationProperty ; rdfs:subPropertyOf . ### http://purl.obolibrary.org/obo/go-test#goslim_generic rdfs:comment "Generic GO slim"^^xsd:string ; rdf:type owl:AnnotationProperty ; rdfs:subPropertyOf . ### http://purl.obolibrary.org/obo/go-test#goslim_goa rdfs:comment "GOA and proteome slim"^^xsd:string ; rdf:type owl:AnnotationProperty ; rdfs:subPropertyOf . ### http://purl.obolibrary.org/obo/go-test#goslim_metagenomics rdfs:comment "Metagenomics GO slim"^^xsd:string ; rdf:type owl:AnnotationProperty ; rdfs:subPropertyOf . ### http://purl.obolibrary.org/obo/go-test#goslim_pir rdfs:comment "PIR GO slim"^^xsd:string ; rdf:type owl:AnnotationProperty ; rdfs:subPropertyOf . ### http://purl.obolibrary.org/obo/go-test#goslim_plant rdfs:comment "Plant GO slim"^^xsd:string ; rdf:type owl:AnnotationProperty ; rdfs:subPropertyOf . ### http://purl.obolibrary.org/obo/go-test#goslim_pombe rdfs:comment "Fission yeast GO slim"^^xsd:string ; rdf:type owl:AnnotationProperty ; rdfs:subPropertyOf . ### http://purl.obolibrary.org/obo/go-test#goslim_synapse rdfs:comment "synapse GO slim"^^xsd:string ; rdf:type owl:AnnotationProperty ; rdfs:subPropertyOf . ### http://purl.obolibrary.org/obo/go-test#goslim_virus rdfs:comment "Viral GO slim"^^xsd:string ; rdf:type owl:AnnotationProperty ; rdfs:subPropertyOf . ### http://purl.obolibrary.org/obo/go-test#goslim_yeast rdfs:comment "Yeast GO slim"^^xsd:string ; rdf:type owl:AnnotationProperty ; rdfs:subPropertyOf . ### http://purl.obolibrary.org/obo/go-test#gosubset_prok rdfs:comment "Prokaryotic GO subset"^^xsd:string ; rdf:type owl:AnnotationProperty ; rdfs:subPropertyOf . ### http://purl.obolibrary.org/obo/go-test#mf_needs_review rdfs:comment "Catalytic activity terms in need of attention"^^xsd:string ; rdf:type owl:AnnotationProperty ; rdfs:subPropertyOf . ### http://purl.obolibrary.org/obo/go-test#syngo_official_label rdfs:label "label approved by the SynGO project"^^xsd:string ; rdf:type owl:AnnotationProperty ; rdfs:subPropertyOf . ### http://purl.obolibrary.org/obo/go-test#systematic_synonym ; rdfs:label "Systematic synonym"^^xsd:string ; rdf:type owl:AnnotationProperty ; rdfs:subPropertyOf . ### http://purl.obolibrary.org/obo/go-test#termgenie_unvetted rdfs:comment "Terms created by TermGenie that do not follow a template and require additional vetting by editors"^^xsd:string ; rdf:type owl:AnnotationProperty ; rdfs:subPropertyOf . ### http://purl.obolibrary.org/obo/go-test#virus_checked rdfs:comment "Viral overhaul terms"^^xsd:string ; rdf:type owl:AnnotationProperty ; rdfs:subPropertyOf . ### http://www.geneontology.org/formats/oboInOwl#SubsetProperty rdf:type owl:AnnotationProperty ; rdfs:label "subset_property"^^xsd:string . ### http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty rdf:type owl:AnnotationProperty ; rdfs:label "synonym_type_property"^^xsd:string . ### http://www.geneontology.org/formats/oboInOwl#hasAlternativeId rdf:type owl:AnnotationProperty ; rdfs:label "has_alternative_id"^^xsd:string . ### http://www.geneontology.org/formats/oboInOwl#hasDbXref rdf:type owl:AnnotationProperty ; rdfs:label "database_cross_reference"^^xsd:string . ### http://www.geneontology.org/formats/oboInOwl#hasExactSynonym rdf:type owl:AnnotationProperty ; rdfs:label "has_exact_synonym"^^xsd:string . ### http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion rdf:type owl:AnnotationProperty ; rdfs:label "has_obo_format_version"^^xsd:string . ### http://www.geneontology.org/formats/oboInOwl#hasOBONamespace rdf:type owl:AnnotationProperty ; rdfs:label "has_obo_namespace"^^xsd:string . ### http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym rdf:type owl:AnnotationProperty ; rdfs:label "has_related_synonym"^^xsd:string . ### http://www.geneontology.org/formats/oboInOwl#hasScope rdf:type owl:AnnotationProperty ; rdfs:label "has_scope"^^xsd:string . ### http://www.geneontology.org/formats/oboInOwl#hasSynonymType rdf:type owl:AnnotationProperty ; rdfs:label "has_synonym_type"^^xsd:string . ### http://www.geneontology.org/formats/oboInOwl#id rdf:type owl:AnnotationProperty . ### http://www.geneontology.org/formats/oboInOwl#inSubset rdf:type owl:AnnotationProperty ; rdfs:label "in_subset"^^xsd:string . ### http://www.geneontology.org/formats/oboInOwl#shorthand rdf:type owl:AnnotationProperty ; rdfs:label "shorthand"^^xsd:string . ### http://www.w3.org/2000/01/rdf-schema#comment rdfs:comment rdf:type owl:AnnotationProperty . ### http://www.w3.org/2000/01/rdf-schema#label rdfs:label rdf:type owl:AnnotationProperty . ################################################################# # Object Properties ################################################################# ### http://purl.obolibrary.org/obo/BFO_0000050 rdf:type owl:ObjectProperty ; owl:inverseOf ; rdf:type owl:TransitiveProperty ; "BFO:0000050"^^xsd:string ; "external"^^xsd:string ; "part_of"^^xsd:string ; "part_of"^^xsd:string ; rdfs:label "part of"^^xsd:string . ### http://purl.obolibrary.org/obo/go-test#has_part rdf:type owl:ObjectProperty . ################################################################# # Classes ################################################################# ### http://purl.obolibrary.org/obo/GO_0005575 rdf:type owl:Class ; "The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."^^xsd:string ; "GO:0008372"^^xsd:string ; "NIF_Subcellular:sao-1337158144"^^xsd:string , "NIF_Subcellular:sao1337158144"^^xsd:string ; "cell or subcellular entity"^^xsd:string , "cellular component"^^xsd:string ; "cellular_component"^^xsd:string ; "subcellular entity"^^xsd:string ; "GO:0005575"^^xsd:string ; , , , , , , , , ; rdfs:comment "Note that, in addition to forming the root of the cellular component ontology, this term is recommended for use for the annotation of gene products whose cellular component is unknown. Note that when this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotated as of the date the annotation was made; the evidence code ND, no data, is used to indicate this."^^xsd:string ; rdfs:label "cellular_component"^^xsd:string . [ rdf:type owl:Axiom ; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."^^xsd:string ; "GOC:go_curators"^^xsd:string , "NIF_Subcellular:sao-1337158144"^^xsd:string ] . [ rdf:type owl:Axiom ; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "cellular component"^^xsd:string ; ] . [ rdf:type owl:Axiom ; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "subcellular entity"^^xsd:string ; "NIF_Subcellular:nlx_subcell_100315"^^xsd:string ] . ### http://purl.obolibrary.org/obo/GO_0005622 rdf:type owl:Class ; rdfs:subClassOf ; "The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm."^^xsd:string ; "Wikipedia:Intracellular"^^xsd:string ; "internal to cell"^^xsd:string , "protoplasm"^^xsd:string ; "cellular_component"^^xsd:string ; "nucleocytoplasm"^^xsd:string , "protoplast"^^xsd:string ; "GO:0005622"^^xsd:string ; , , , , , ; rdfs:label "intracellular"^^xsd:string . [ rdf:type owl:Axiom ; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm."^^xsd:string ; "ISBN:0198506732"^^xsd:string ] . [ rdf:type owl:Axiom ; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "nucleocytoplasm"^^xsd:string ; "GOC:mah"^^xsd:string ] . [ rdf:type owl:Axiom ; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "protoplast"^^xsd:string ; "GOC:mah"^^xsd:string ] . ### http://purl.obolibrary.org/obo/GO_0005623 rdf:type owl:Class ; rdfs:subClassOf ; "The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope."^^xsd:string ; "cell and encapsulating structures"^^xsd:string ; "NIF_Subcellular:sao1813327414"^^xsd:string , "Wikipedia:Cell_(biology)"^^xsd:string ; "cellular_component"^^xsd:string ; "GO:0005623"^^xsd:string ; , , , ; rdfs:label "cell"^^xsd:string . [ rdf:type owl:Axiom ; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope."^^xsd:string ; "GOC:go_curators"^^xsd:string ] . ### http://purl.obolibrary.org/obo/GO_0005634 rdf:type owl:Class ; rdfs:subClassOf ; "A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent."^^xsd:string ; "NIF_Subcellular:sao1702920020"^^xsd:string , "Wikipedia:Cell_nucleus"^^xsd:string ; "cell nucleus"^^xsd:string ; "cellular_component"^^xsd:string ; "GO:0005634"^^xsd:string ; , , , , , , , ; rdfs:label "nucleus"^^xsd:string . [ rdf:type owl:Axiom ; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent."^^xsd:string ; "GOC:go_curators"^^xsd:string ] . [ rdf:type owl:Axiom ; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "cell nucleus"^^xsd:string ; ] . ### http://purl.obolibrary.org/obo/GO_0008372 rdf:type owl:Class ; ; ; owl:deprecated "true"^^xsd:boolean . ### http://purl.obolibrary.org/obo/GO_0043226 rdf:type owl:Class ; rdfs:subClassOf ; "Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane."^^xsd:string ; "NIF_Subcellular:sao1539965131"^^xsd:string , "Wikipedia:Organelle"^^xsd:string ; "cellular_component"^^xsd:string ; "GO:0043226"^^xsd:string ; , , , ; rdfs:label "organelle"^^xsd:string . [ rdf:type owl:Axiom ; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane."^^xsd:string ; "GOC:go_curators"^^xsd:string ] . ### http://purl.obolibrary.org/obo/GO_0043227 rdf:type owl:Class ; rdfs:subClassOf ; "Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane."^^xsd:string ; "NIF_Subcellular:sao414196390"^^xsd:string ; "membrane-enclosed organelle"^^xsd:string ; "cellular_component"^^xsd:string ; "GO:0043227"^^xsd:string ; ; rdfs:label "membrane-bounded organelle"^^xsd:string . [ rdf:type owl:Axiom ; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane."^^xsd:string ; "GOC:go_curators"^^xsd:string ] . ### http://purl.obolibrary.org/obo/GO_0043229 rdf:type owl:Class ; rdfs:subClassOf , ; "Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane."^^xsd:string ; "cellular_component"^^xsd:string ; "GO:0043229"^^xsd:string ; , ; rdfs:label "intracellular organelle"^^xsd:string . [ rdf:type owl:Axiom ; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane."^^xsd:string ; "GOC:go_curators"^^xsd:string ] . ### http://purl.obolibrary.org/obo/GO_0043231 rdf:type owl:Class ; rdfs:subClassOf , ; "Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane."^^xsd:string ; "intracellular membrane-enclosed organelle"^^xsd:string ; "cellular_component"^^xsd:string ; "GO:0043231"^^xsd:string ; , ; rdfs:label "intracellular membrane-bounded organelle"^^xsd:string . [ rdf:type owl:Axiom ; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane."^^xsd:string ; "GOC:go_curators"^^xsd:string ] . ### http://purl.obolibrary.org/obo/GO_0044424 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf , [ rdf:type owl:Restriction ; owl:onProperty ; owl:someValuesFrom ] ; "Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm."^^xsd:string ; "cellular_component"^^xsd:string ; "GO:0044424"^^xsd:string ; , , ; rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC."^^xsd:string ; rdfs:label "intracellular part"^^xsd:string . [ rdf:type owl:Axiom ; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm."^^xsd:string ; "GOC:jl"^^xsd:string ] . ### http://purl.obolibrary.org/obo/GO_0044464 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf , [ rdf:type owl:Restriction ; owl:onProperty ; owl:someValuesFrom ] ; "Any constituent part of a cell, the basic structural and functional unit of all organisms."^^xsd:string ; "NIF_Subcellular:sao628508602"^^xsd:string ; "cellular subcomponent"^^xsd:string ; "cellular_component"^^xsd:string ; "protoplast"^^xsd:string ; "GO:0044464"^^xsd:string ; , , , ; rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC."^^xsd:string ; rdfs:label "cell part"^^xsd:string . [ rdf:type owl:Axiom ; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "Any constituent part of a cell, the basic structural and functional unit of all organisms."^^xsd:string ; "GOC:jl"^^xsd:string ] . [ rdf:type owl:Axiom ; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "cellular subcomponent"^^xsd:string ; "NIF_Subcellular:sao628508602"^^xsd:string ] . [ rdf:type owl:Axiom ; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "protoplast"^^xsd:string ; "GOC:mah"^^xsd:string ] . ### Generated by the OWL API (version 4.5.0) https://github.com/owlcs/owlapi