TRILL Manual

TRILL is a framework born from the original TRILL project whose contained a single reasoner [23]. The name of this reasoner, TRILL, is an acronym for “Tableau Reasoner for descrIption Logics in Prolog”. In the next years, this project has been extended to the current framework ([21,24,25]) that contains three different reasoners:

After generating the set of explanations or of the pinpointing formula, TRILL and TRILL\(^P\) represent them as a binary decision diagram. From this diagram, all the reasoners of this framework can computes the probability of the query. The management of the tableau rules’ non-determinism is delegated to the Prolog language.

The TRILL framework forms a layer cake, shown in Figure 1, designed to facilitate its extension. The lower layer, called “Translation Utilities”, contains a library for translating the input KB in case it is given in the RDF/XML format and loading it in the Prolog database, in order to be accessible to the upper layers.

TRILL framework is available in two versions, one for Yap Prolog and one for SWI-Prolog. They differ slightly in the features offered. The Yap version differs principally in the absence of the translation module form OWL/RDF to TRILL syntax and in a different management of the explanations in TRILL\(^P\). the Yap version also lacks of TORNADO and it is no more maintained.

Installation

TRILL is distributed as a pack of SWI-Prolog. It can be installed with pack_install/1

It requires the packs bddem¹. It is installed automatically when installing pack trill or can installed manually as

The package bddem uses a foreign library and contains the library binaries for 32 and 64 bits Linux and 64 bits Windows. If you want to recompile the foreign library you can use

On 32 and 64 bits Linux this should work out of the box. On 64 bits Windows the library must be rebuilt by hand, see the pack page https://github.com/friguzzi/bddem

Note that the pack on which trill depends are not upgraded automatically in this case so they need to be upgraded manually.

Example of use

Syntax

Description Logics (DLs) are knowledge representation formalisms that are at the basis of the Semantic Web [1,2] and are used for modelling ontologies. They are represented using a syntax based on concepts, basically sets of individuals of the domain, and roles, sets of pairs of individuals of the domain. A more formal description can be found in the Appendix 9.

RDF/XML syntax can be used by exploiting the predicate owl_rdf/1. For example:

For a brief introduction on RDF/XML syntax see RDF/XML syntax and tools section below (Sec. 3.2).

Note that each single owl_rdf/1 must be self contained and well formatted, it must start and end with rdf:RDF tag and contain all necessary declarations (namespaces, entities, ...).

An example of the combination of both syntaxes is shown the example johnEmployee.pl. It models that john is an employee and that employees are workers, which are in turn people (modeled by the concept person).

Prolog Syntax

Declarations

Prolog syntax allows, as in standard OWL, the declaration of classes, properties, etc.

Prolog syntax allows also the declaration of aliases for namespaces by using the kb_prefix/2 predicate.

After this declaration, the prefix foo is available, thus, instead of http://example.foo#john, one can write foo:john. It is possible to define also an empty prefix as

Note: Only one prefix per alias is allowed. Aliases defined in OWL/RDF part have the precedence, in case more than one prefix was assigned to the same alias, TRILL keeps only the first assignment.

Axioms

while the assertion worker is equal to the intersection of person and not unemployed

In particular, an axiom can be annotated with a probability which defines the degree of belief in the truth of the axiom. See Section 4 for details.

Concepts descriptions

For example, the class workingman is the intersection of worker with the union of man and woman. It can be defined as:

RDF/XML syntax and tools

As said before, TRILL is able to automatically translate RDF/XML knowledge bases when passed as a string using the preticate owl_rdf/1.

The first axiom states that fluffy is a Cat. The second states that every Cat is also a Pet. The third states that the role hasAnimal links together kevin and fluffy.

RDF (Resource Descritpion Framework) is a standard W3C. See the syntax specification for more details. RDF is a standard XML-based used for representing knowledge by means of triples. A representations of the three axioms seen above is shown below.

Annotations are assertable using an extension of RDF/XML. For example the annotated axiom below, defined using the Prolog sintax

If you define the annotated axiom in the RDF/XML part, the annotation must be declared in the knowledge base as follow

Semantics

Finding the explanations for a query is important for probabilistic inference. In the following we briefly describe the DISPONTE semantics [13], which requires the set of all the justifications to compute the probability of the queries.

DISPONTE [13,21] applies the distribution semantics [15] to Probabilistic Description Logic KBs. In DISPONTE, a probabilistic knowledge base \({\cal K}\) contains a set of probabilistic axioms which take the form \[\begin{aligned} & p::E\label{pax} &\end{aligned}\] where \(p\) is a real number in \([0,1]\) and \(E\) is a DL axiom. The probability \(p\) can be interpreted as the degree of our belief in the truth of axiom \(E\). For example, a probabilistic concept membership axiom \(p::a:C\) means that we have degree of belief \(p\) in \(C(a)\). A probabilistic concept inclusion axiom of the form \(p::C\sqsubseteq D\) represents the fact that we believe in the truth of \(C \sqsubseteq D\) with probability \(p\).

For more detail about probabilistic inference with the TRILL framework, we refer the interested reader to Appendix 10 and to [22].

\[\begin{aligned} && (E_1)\ 0.5 ::\ & \exists hasAnimal.Pet \sqsubseteq PetOwner\\ && & {\mathit{fluffy}}: Cat \\ && & tom: Cat \\ && (E_2)\ 0.6 ::\ & Cat\sqsubseteq Pet\\ && & (kevin,{\mathit{fluffy}}):hasAnimal \\ && & (kevin,tom):hasAnimal \end{aligned}\] It indicates that the individuals that own an animal which is a pet are pet owners with a 50% probability and that \(kevin\) owns the animals \({\mathit{fluffy}}\) and \(tom\), which are cats. Moreover, cats are pets with a 60% probability.

The query axiom \(Q=kevin:PetOwner\) is true with probability \(P(Q)=0.5\cdot 0.6=0.3\).

Inference

TRILL systems can answer many different queries. To do so, it exploits an algorithm called tableau algorithm, which is able to collect explanations. In the following you can find an example that shows how the tableau works. In section [sec:trillq] we will see how queries can be asked with TRILL systems.

Consider a simple knowledge base inspired by the film “The Godfather” containing the following axioms: \[\begin{aligned} &tom : Cat\\ &(donVito, tom) : hasPet\\ &Cat \sqsubseteq Pet\\ &\exists hasAnimal.Pet \sqsubseteq NatureLover\\ &NatureLover \sqsubseteq GoodPerson\\ &hasPet \sqsubseteq hasAnimal\end{aligned}\]

The axioms are telling what is known about the domain: (1) Tom is an individual of the domain, and he is a Cat; (2) donVito (Vito Corleone) has tom as his pet; (3) all cats are also pets; (4) everyone having at least one animal which is a pet is a nature lover; (5) nature lovers are good people; and (6) if one has a pet, she/he also has an animal.

The first two axioms are assertional axioms (hence they constitute the ABox), the other four axioms define the TBox. Axiom 1 is called class assertion, 2 is called property assertion, 3,4,5 are called class subsumption axioms, and axiom 6 is called property subsumption axiom.

To check, for example, whether don Vito Corleone is a good person, the tableau algorithm builds a graph, called the tableau. The initial tableau contains information from the ABox plus the negation of the query, as depicted in Figure2. This last axiom is added since the underlying proof mechanism uses refutation. In logic, working by refutation means assuming the opposite of the query one wants to prove. Then, if this assumption leads to a contradiction, this means that the axioms of the ontology allows to prove that the query is true, and thus that its opposite is false. In practice, working by refutation means that the graph must assume that the posed query be false, the tableau algorithm expands all the known axioms (including the negation of the query) and looks for contradictions present in the final graph. The presence of a contradiction in a node proves that the query is true because the graph depicts at least one way to contradict the negation of that query, and thus it depicts at least one way to prove that the opposite of the query contradicts what is defined by the ontology.

This means that if the opposite of the query is (artificially) added to the knowledge base as a new axiom, this ontology will contain at least two pieces of information one contradicting the other.

The tableau has one node for each individual: tom is labelled as cat, \(donVito\) is labelled as not a good person (the negation of the query), and the edge between them is labelled as \(hasPet\) because the individuals are connected by this property (Figure 2).

At this point, the graph of Figure 2 is expanded using the axioms of the ontology to check the truth of the query and to build the justifications. Therefore, the tableau algorithm takes e.g. the axiom 3, “cats are pets”, and adds to the node for tom also the label \(pet\) since he is a cat. This new information is true and its justification is given directly by the set of axioms 1,3: axiom 3 because since \(tom\) is a \(cat\) (axiom 1) he is also a \(pet\). The same operation can be done for the edge (relationship) between tom and \(donVito\), which can be labelled also as \(hasAnimal\) because of axioms 2 and 6.

At this point, the calculus can deduce that \(donVito\) belongs to the class \(\exists hasAnimal.Pet\) because \(donVito\) is connected with \(tom\), which is a \(pet\) (axioms 1,3), via property \(hasAnimal\) (axioms 2,6). Therefore, \(donVito\)’s node is labelled also as \(\exists hasAnimal.Pet\) with a justification given by the union of the axioms associated with the used axioms, therefore its justification is given by the set of the involved axioms 1,2,3,6. Then, the tableau graph is further expanded by adding the class \(NatureLover\) to \(donVito\)’s node using axiom 4 and finally, by adding also the class \(GoodPerson\) using label \(NatureLover\) (axioms 1,2,3,4,6) and axiom 5, creating as justification the set of axioms 1,2,3,4,5,6.

The expanded graph contains now a contradiction, i.e., \(donVito\) is labelled as \(GoodPerson\) and as not a \(GoodPerson\) (i.e., \(\neg GoodPerson\)), therefore, by refutation, the query “Is don Vito Corleone a good person?” is true, with justification given by the axioms 1,2,3,4,5,6, that are the axioms of the KB necessary to deduce this information.

From this example, it would be clear why the use of probabilistic information is useful. Indeed, don Vito Corleone is hardly classifiable as a good person. This is because not all people who are nature lovers are also good, and therefore, one could say that axiom 5 is true with probability 0.4. It would also be arguable that everyone who has animals is also a nature lover, making probabilistic also this axiom. For a formal description of how the probability of the query is computed see the Appendix 11.

Possible Queries

TRILL can compute the probability or find an explanation of the following queries:

Probabilistic Queries

TRILL can be queried for computing the probability of queries. A resulting 0 probaility means that the query is false w.r.t. the knowledge base, while a probability value 1 that the query is certainly true.

The probability of an individual to belong to a concept can be asked using TRILL with the predicate

If you want to know the probability with which a class is a subclass of another you have to use

The probability of the unsatisfiability of a concept can be asked with the predicate

This query for example corresponds with a subsumption query, which is represented as the intersection of the subclass and the complement of the superclass.

Finally, you can ask the probability of the inconsistency of the knowledge base with

Non Probabilistic Queries

In TRILL you can also ask whether a query is true or false w.r.t. the knowledge base and in case of a succesful query an explanation can be returned as well. Query predicates in this case differs in the number of arguments, in the second case, when we want also an explanation, an extra argument is added to unify with the list of axioms build to explain the query.

In the first query the result is true because Tom belongs to cat, in the second case TRILL returns the explanation

Similarly, to ask whether two individuals are related by a role you have to use the queries

In this case, the returned explanation is the same obtained by querying if cat is subclass of pet with the sub_class/3 predicate, i.e., [subClassOf(cat,pet)]

The predicate above returns explanations one at a time. To collect all the explanations with a single goal you can use the predicates:

Query Options

The behaviour of the queries can be fine tuned using the query options. To use them you need to use the predicates:

For example, if you want to find the probability of the query \(Q=kevin:PetOwner\) computed on at most 2 explanations allowing at most 1 second for the explanations search you can use the goal

TRILL Useful Predicates

They register the alias for prefixes. The firs registers ShortPref for the prefix LongPref, while the second register all the alias prefixes contained in Prefixes. The input list must contain pairs alias=prefix, i.e., [('foo'='http://example.foo#')]. In both cases, the empty string '' can be defined as alias. The predicates

remove from the registered aliases the one given in input. In particular, remove_kb_prefix/1 takes as input a string that can be an alias or a prefix and removes the pair containing the string from the registered aliases.

These predicates add (all) the given axiom to the knowledge base. While, to remove axioms can be similarly used the predicates

This predicate searches in the loaded knowledge base axioms that unify with Axiom.

The predicate load_owl_kb/1 allows to load a KB defined using a pure RDF/XML syntax. The predicate load_kb/1 allows to load a KB defined using the Prolog syntax, i.e., axioms and/or owl_rdf/1 predicate.

Loading a KB in TRILL

Once the KB is ready to be used, you must load it in TRILL to perform inference. There are two ways to do that:

Case 1: Self-Contained Prolog File

In the first case, it is necessary to specify which algorithm, TRILL, TRILL\(^P\) or TORNADO, has to be loaded for performing inference. This is done by using at the beginning of the input file the directive

The KB file will be similar to what shown in the following (donVito.pl examples):

Executing a Query

To run a query, you can simply load the Prolog file, for example peoplePets.pl, as

The linked file contains axioms defined in both syntaxes accepted by TRILL, RDF/XML and Prolog Syntax, based on definition of Thea library. peoplePets.pl is equivalent with the following KB

At this point the KB is loaded, you can ask every query or run every predicate shown in Section 5.1.

Case 2: Independent KB File

If you do not want to specify in your KB which reasoner to use, you can prepare the KB to that it contains only the axioms. The KB file can be define using pure RDF/XML syntax or TRILL’s Prolog syntax. In this case the file will NOT contain the directives:

Executing a Query

You can load the KB using the predicates load_owl_kb(<filename>). and load_kb(<filename>). in the following way:

Now the KB is loaded and the queries or TRILL’s utility predicates can be executed in the usual way.

Files

The pack/trill/prolog/examples folder in SWI-Prolog home contains some example programs. The pack/trill/doc folder in SWI-Prolog home contains this manual in latex, html and pdf.

License

TRILL follows the Artistic License 2.0 that you can find in TRILL root folder. The copyright is by Riccardo Zese.

The library Thea at the basis of the translation module is available under the GNU/GPL license.

Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:

THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAU-SED
AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Description Logics

In this section, we recall the expressive description logic \(\mathcal{ALC}\) [18]. We refer to [10] for a detailed description of \(\mathcal{SHOIN}(\mathbf{D})\) DL, that is at the basis of OWL DL.

Let \(\mathbf{A}\), \(\mathbf{R}\) and \(\mathbf{I}\) be sets of atomic concepts, roles and individuals. A role is an atomic role \(R \in \mathbf{R}\). Concepts are defined by induction as follows. Each \(C \in \mathbf{A}\), \(\bot\) and \(\top\) are concepts. If \(C\), \(C_1\) and \(C_2\) are concepts and \(R \in \mathbf{R}\), then \((C_1\sqcap C_2)\), \((C_1\sqcup C_2 )\), \(\neg C\), \(\exists R.C\), and \(\forall R.C\) are concepts. Let \(C\), \(D\) be concepts, \(R \in \mathbf{R}\) and \(a, b \in \mathbf{I}\). An ABox \({\cal A}\) is a finite set of concept membership axioms \(a : C\) and role membership axioms \((a, b) : R\), while a TBox \({\cal T}\) is a finite set of concept inclusion axioms \(C\sqsubseteq D\). \(C \equiv D\) abbreviates \(C \sqsubseteq D\) and \(D\sqsubseteq C\).

A knowledge base \({\cal K}= ({\cal T}, {\cal A})\) consists of a TBox \({\cal T}\) and an ABox \({\cal A}\). A KB \({\cal K}\) is assigned a semantics in terms of set-theoretic interpretations \({\cal I}= (\Delta^{\cal I}, \cdot^{\cal I})\), where \(\Delta^{\cal I}\) is a non-empty domain and \(\cdot^{\cal I}\) is the interpretation function that assigns an element in \(\Delta ^{\cal I}\) to each \(a \in \mathbf{I}\), a subset of \(\Delta^{\cal I}\) to each \(C \in \mathbf{A}\) and a subset of \(\Delta^{\cal I}\times \Delta^{\cal I}\) to each \(R \in \mathbf{R}\).

DISPONTE

In the field of Probabilistic Logic Programming (PLP for short) many proposals have been presented. An effective and popular approach is the Distribution Semantics [15], which underlies many PLP languages such as PRISM [15,16], Independent Choice Logic [12], Logic Programs with Annotated Disjunctions [20] and ProbLog [5]. Along this line, many reserchers proposed to combine probability theory with Description Logics (DLs for short) [10,19]. DLs are at the basis of the Web Ontology Language (OWL for short), a family of knowledge representation formalisms used for modeling information of the Semantic Web

TRILL follows the DISPONTE [14,21] semantics to compute the probability of queries. DISPONTE applies the distribution semantics [15] of probabilistic logic programming to DLs. A program following this semantics defines a probability distribution over normal logic programs called worlds. Then the distribution is extended to queries and the probability of a query is obtained by marginalizing the joint distribution of the query and the programs.

In DISPONTE, a probabilistic knowledge base \({\cal K}\) is a set of certain axioms or probabilistic axioms in which each axiom is independent evidence. Certain axioms take the form of regular DL axioms while probabilistic axioms are \(p::E\) where \(p\) is a real number in \([0,1]\) and \(E\) is a DL axiom.

The idea of DISPONTE is to associate independent Boolean random variables to the probabilistic axioms. To obtain a world, we include every formula obtained from a certain axiom. For each probabilistic axiom, we decide whether to include it or not in \(w\). A world therefore is a non probabilistic KB that can be assigned a semantics in the usual way. A query is entailed by a world if it is true in every model of the world.

The probability \(p\) can be interpreted as an epistemic probability, i.e., as the degree of our belief in axiom \(E\). For example, a probabilistic concept membership axiom \(p::a:C\) means that we have degree of belief \(p\) in \(C(a)\). A probabilistic concept inclusion axiom of the form \(p::C\sqsubseteq D\) represents our belief in the truth of \(C \sqsubseteq D\) with probability \(p\).

Formally, an atomic choice is a couple \((E_i,k)\) where \(E_i\) is the \(i\)th probabilistic axiom and \(k\in \{0,1\}\). \(k\) indicates whether \(E_i\) is chosen to be included in a world (\(k\) = 1) or not (\(k\) = 0). A composite choice \(\kappa\) is a consistent set of atomic choices, i.e., \((E_i,k)\in\kappa, (E_i,m)\in \kappa\) implies \(k=m\) (only one decision is taken for each formula). The probability of a composite choice \(\kappa\) is \(P(\kappa)=\prod_{(E_i,1)\in \kappa}p_i\prod_{(E_i, 0)\in \kappa} (1-p_i)\), where \(p_i\) is the probability associated with axiom \(E_i\). A selection \(\sigma\) is a total composite choice, i.e., it contains an atomic choice \((E_i,k)\) for every probabilistic axiom of the probabilistic KB. A selection \(\sigma\) identifies a theory \(w_\sigma\) called a world in this way: \(w_\sigma={\cal C}\cup\{E_i|(E_i,1)\in \sigma\}\) where \({\cal C}\) is the set of certain axioms. Let us indicate with \(\mathcal{S}_{\cal K}\) the set of all selections and with \(\mathcal{W}_{\cal K}\) the set of all worlds. The probability of a world \(w_\sigma\) is \(P(w_\sigma)=P(\sigma)=\prod_{(E_i,1)\in \sigma}p_i\prod_{(E_i, 0)\in \sigma} (1-p_i)\). \(P(w_\sigma)\) is a probability distribution over worlds, i.e., \(\sum_{w\in \mathcal{W}_{\cal K}}P(w)=1\).

We can now assign probabilities to queries. Given a world \(w\), the probability of a query \(Q\) is defined as \(P(Q|w)=1\) if \(w\models Q\) and 0 otherwise. The probability of a query can be defined by marginalizing the joint probability of the query and the worlds, i.e. \(P(Q)=\sum_{w\in \mathcal{W}_{\cal K}}P(Q,w)=\sum_{w\in \mathcal{W}_{\cal K}} P(Q|w)p(w)=\sum_{w\in \mathcal{W}_{\cal K}: w\models Q}P(w)\).

Consider the following KB, inspired by the people+pets ontology [11]: \(0.5\ \ ::\ \ \exists hasAnimal.Pet \sqsubseteq NatureLover\ \ \ \ \ 0.6\ \ ::\ \ Cat\sqsubseteq Pet\)
\((kevin,tom):hasAnimal\ \ \ \ \ (kevin,{\mathit{fluffy}}):hasAnimal\ \ \ \ \ tom: Cat\ \ \ \ \ {\mathit{fluffy}}: Cat\)
The KB indicates that the individuals that own an animal which is a pet are nature lovers with a 50% probability and that \(kevin\) has the animals \({\mathit{fluffy}}\) and \(tom\). Fluffy and \(tom\) are cats and cats are pets with probability 60%. We associate a Boolean variable to each axiom as follow \(F_1 = \exists hasAnimal.Pet \sqsubseteq NatureLover\), \(F_2=(kevin,{\mathit{fluffy}}):hasAnimal\), \(F_3=(kevin,tom):hasAnimal\), \(F_4={\mathit{fluffy}}: Cat\), \(F_5=tom: Cat\) and \(F_6= Cat\sqsubseteq Pet\).

The KB has four worlds and the query axiom \(Q=kevin:NatureLover\) is true in one of them, the one corresponding to the selection \(\{(F_1,1),(F_2,1)\}\). The probability of the query is \(P(Q)=0.5\cdot 0.6=0.3\).

Sometimes we have to combine knowledge from multiple, untrusted sources, each one with a different reliability. Consider a KB similar to the one of Example [people+petsxy] but where we have a single cat, \({\mathit{fluffy}}\). \(\exists hasAnimal.Pet \sqsubseteq NatureLover\ \ \ \ \ (kevin,{\mathit{fluffy}}):hasAnimal\ \ \ \ \ Cat\sqsubseteq Pet\)

and there are two sources of information with different reliability that provide the information that \({\mathit{fluffy}}\) is a cat. On one source the user has a degree of belief of 0.4, i.e., he thinks it is correct with a 40% probability, while on the other source he has a degree of belief 0.3. The user can reason on this knowledge by adding the following statements to his KB: \(0.4\ \ ::\ \ {\mathit{fluffy}}: Cat\ \ \ \ \ 0.3\ \ ::\ \ {\mathit{fluffy}}: Cat\)
The two statements represent independent evidence on \({\mathit{fluffy}}\) being a cat. We associate \(F_1\) (\(F_2\)) to the first (second) probabilistic axiom.

The query axiom \(Q=kevin:NatureLover\) is true in 3 out of the 4 worlds, those corresponding to the selections \(\{ \{(F_1,1),(F_2,1)\}, \{(F_1,1),(F_2,0)\}, \{(F_1,0),(F_2,1)\}\}\). So \(P(Q)=0.4\cdot 0.3+0.4\cdot 0.7+ 0.6\cdot 0.3=0.58.\) This is reasonable if the two sources can be considered as independent. In fact, the probability comes from the disjunction of two independent Boolean random variables with probabilities respectively 0.4 and 0.3: \(P(Q) = P(X_1\vee X_2) = P(X_1)+P(X_2)-P(X_1\wedge X_2) = P(X_1)+P(X_2)-P(X_1)P(X_2) = 0.4+0.3-0.4\cdot 0.3=0.58\)

Inference

Traditionally, a reasoning algorithm decides whether an axiom is entailed or not by a KB by refutation: the axiom \(E\) is entailed if \(\neg E\) has no model in the KB. Besides deciding whether an axiom is entailed by a KB, we want to find also explanations for the axiom, in order to compute the probability of the axiom.

Computing Queries Probability

The problem of finding explanations for a query has been investigated by various authors [6–9,17,21]. It was called axiom pinpointing in [17] and considered as a non-standard reasoning service useful for tracing derivations and debugging ontologies. In particular, in [17] the authors define minimal axiom sets (MinAs for short). [MinA] Let \({\cal K}\) be a knowledge base and \(Q\) an axiom that follows from it, i.e., \({\cal K}\models Q\). We call a set \(M\subseteq {\cal K}\) a minimal axiom set or MinA for \(Q\) in \({\cal K}\) if \(M \models Q\) and it is minimal w.r.t. set inclusion.

The problem of enumerating all MinAs is called min-a-enum. All-MinAs(\(Q,{\cal K}\)) is the set of all MinAs for query \(Q\) in knowledge base \({\cal K}\).

A tableau is a graph where each node represents an individual \(a\) and is labeled with the set of concepts \({\cal L}(a)\) it belongs to. Each edge \(\langle a, b\rangle\) in the graph is labeled with the set of roles to which the couple \((a, b)\) belongs. Then, a set of consistency preserving tableau expansion rules are repeatedly applied until a clash (i.e., a contradiction) is detected or a clash-free graph is found to which no more rules are applicable. A clash is for example a couple \((C, a)\) where \(C\) and \(\neg C\) are present in the label of a node, i.e. \({C, \neg C} \subseteq {\cal L}(a)\).

Some expansion rules are non-deterministic, i.e., they generate a finite set of tableaux. Thus the algorithm keeps a set of tableaux that is consistent if there is any tableau in it that is consistent, i.e., that is clash-free. Each time a clash is detected in a tableau \(G\), the algorithm stops applying rules to \(G\). Once every tableau in \(T\) contains a clash or no more expansion rules can be applied to it, the algorithm terminates. If all the tableaux in the final set \(T\) contain a clash, the algorithm returns unsatisfiable as no model can be found. Otherwise, any one clash-free completion graph in \(T\) represents a possible model for the concept and the algorithm returns satisfiable.

To compute the probability of a query, the explanations must be made mutually exclusive, so that the probability of each individual explanation is computed and summed with the others. To do that we assign independent Boolean random variables to the axioms contained in the explanations and defining the Disjunctive Normal Form (DNF) Boolean formula \(f_K\) which models the set of explanations. Thus \(f_K(\mathbf{X})=\bigvee_{\kappa\in K}\bigwedge_{(E_i,1)}X_{i}\bigwedge_{(E_i,0)}\overline{X_{i}}\) where \(\mathbf{X}=\{X_{i}|(E_i,k)\in\kappa,\kappa\in K\}\) is the set of Boolean random variables. We can now translate \(f_K\) to a Binary Decision Diagram (BDD), from which we can compute the probability of the query with a dynamic programming algorithm that is linear in the size of the BDD.

In [3,4] the authors consider the problem of finding a pinpointing formula instead of All-MinAs(\(Q,{\cal K}\)). The pinpointing formula is a monotone Boolean formula in which each Boolean variable corresponds to an axiom of the KB. This formula is built using the variables and the conjunction and disjunction connectives. It compactly encodes the set of all MinAs. Let’s assume that each axiom \(E\) of a KB \({\cal K}\) is associated with a propositional variable, indicated with \(var(E)\). The set of all propositional variables is indicated with \(var({\cal K})\). A valuation \(\nu\) of a monotone Boolean formula is the set of propositional variables that are true. For a valuation \(\nu \subseteq var({\cal K})\), let \({\cal K}_{\nu} := \{t \in {\cal K}|var(t)\in\nu\}\). [Pinpointing formula] Given a query \(Q\) and a KB \({\cal K}\), a monotone Boolean formula \(\phi\) over \(var({\cal K})\) is called a pinpointing formula for \(Q\) if for every valuation \(\nu \subseteq var({\cal K})\) it holds that \({\cal K}_{\nu} \models Q\) iff \(\nu\) satisfies \(\phi\).

In Lemma 2.4 of [4] the authors proved that the set of all MinAs can be obtained by transforming the pinpointing formula into a Disjunctive Normal Form Boolean formula (DNF) and removing disjuncts implying other disjuncts.

Irrespective of which representation of the explanations we choose, a DNF or a general pinpointing formula, we can apply knowledge compilation and transform it into a Binary Decision Diagram (BDD), from which we can compute the probability of the query with a dynamic programming algorithm that is linear in the size of the BDD.

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Introduction

Installation

Example of use

Syntax

Prolog Syntax

Declarations

Axioms

Concepts descriptions

RDF/XML syntax and tools

Semantics

Inference

Possible Queries

Probabilistic Queries

Non Probabilistic Queries

Query Options

TRILL Useful Predicates

Loading a KB in TRILL

Case 1: Self-Contained Prolog File

Executing a Query

Case 2: Independent KB File

Executing a Query

Files

License

Description Logics

DISPONTE

Inference

Computing Queries Probability