/*  Part of SWISH

    Author:        Jan Wielemaker
    E-mail:        J.Wielemaker@cs.vu.nl
    WWW:           http://www.swi-prolog.org
    Copyright (C): 2014-2018, VU University Amsterdam
			      CWI Amsterdam
    All rights reserved.

    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions
    are met:

    1. Redistributions of source code must retain the above copyright
       notice, this list of conditions and the following disclaimer.

    2. Redistributions in binary form must reproduce the above copyright
       notice, this list of conditions and the following disclaimer in
       the documentation and/or other materials provided with the
       distribution.

    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
    "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
    LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
    FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE
    COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT,
    INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
    BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
    LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
    CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
    LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN
    ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
    POSSIBILITY OF SUCH DAMAGE.

    Changes by:    Riccardo Zese
    E-mail:        riccardo.zese@unife.it
    Copyright:	   2014-2016, University of Ferrara
*/

/**
 * @fileOverview
 * Combine the SWISH components.
 *
 * @version 0.2.0
 * @author Jan Wielemaker, J.Wielemaker@vu.nl
 * @requires jquery
 */

define(["jquery",
  "config",
  "preferences",
  "history",
  "modal",
	 "backend",

  "chat",
  "splitter",
  "bootstrap",
  "pane",
  "tabbed",
  "notebook",
  "navbar",
  "search",
  "editor",
  "query",
  "runner",
  "term",
  "laconic",
  "login",
  "chatroom",
  "version",
  "d3",
  "c3",
  "svg-pan-zoom"
  //"class-transformer"
], function($, config, preferences, history, modal) {

  preferences.setDefault("semantic-highlighting", true);
  preferences.setDefault("emacs-keybinding", false);
  preferences.setDefault("new-tab", true);
  preferences.setDefault("ace-editor", false);
  preferences.setDefault("monaco-editor", false);
  preferences.setDefault("preserve-state", false);
  preferences.setDefault("auto-binding-layout", true);
  preferences.setInform("preserve-state", ".unloadable");

  window.setupPanesOnce = false;

  (function($) {
    var pluginName = 'swish';

    function glyph(name, func) {
      func.glyph = name;
      return func;
    }

    function icon(name, func) {
      func.typeIcon = name;
      return func;
    }

    var defaults = {
      menu: {
        "File": {
          "Save ...": glyph("cloud-upload", function() {
            menuBroadcast("save", "as");
          }),
          "Info & history ...": glyph("info-sign", function() {
            menuBroadcast("fileInfo");
          }),
          "Reload": glyph("refresh", function() {
            menuBroadcast("reload");
          }),
          "Open recent": {
            type: "submenu",
            glyph: "paperclip",
            action: function(ev) {
              history.openRecent(ev, $(this).data('document'));
            },
            update: history.updateRecentUL
          },
          "Share": "--",
          "Follow ...": config.http.locations.follow_file_options ?
            glyph("eye-open", function() {
              menuBroadcast("follow-file");
            }) : undefined,
          "Chat ...": icon("chat", function() {
            menuBroadcast("chat-about-file");
          }),
          "Chat help room ...": icon("chathelp", function() {
            $("body").swish('playFile', {
              file: "Help.swinb",
              chat: 'large'
            });
          }),
          "Start TogetherJS ...": icon("togetherjs", function() {
            $("body").swish('collaborate');
          }),
          "Export": "--",
          "Download": glyph("floppy-save", function() {
            menuBroadcast("download");
          }),
          "Print ...": glyph("print", function() {
            menuBroadcast("print");
          })
        },
        "Edit": {
          "Clear messages": function() {
            menuBroadcast("clearMessages");
          },
          "Changes": "--",
          "View changes": function() {
            menuBroadcast("diff");
          },
          "Edit": "--",
          "Find (Ctrl-F)": function() {
            menuBroadcast("edit-command", "find");
          },
          "Find and replace (Shift-Ctrl-F)": function() {
            menuBroadcast("edit-command", "replace");
          },
          "Jump to line (Alt-G)": function() {
            menuBroadcast("edit-command", "jumpToLine");
          },
          "Options": "--",
          "Semantic highlighting": {
            preference: "semantic-highlighting",
            type: "checkbox"
          },
          "Emacs Keybinding": {
            preference: "emacs-keybinding",
            type: "checkbox",
            value: "false"
          },
          "Use ACE for unknown Files": {
            preference: "ace-editor",
            type: "checkbox",
            value: "false"
          },
          "Use Monaco for some Files": {
            preference: "monaco-editor",
            type: "checkbox",
            value: "false"
          },

          "Open document in new tab": {
            preference: "new-tab",
            type: "checkbox",
            value: "true"
          },
          "Preserve state in browser": {
            preference: "preserve-state",
            type: "checkbox",
            value: "true"
          }
        },
        "Examples": function(navbar, dropdown) {
          $("body").swish('populateExamples', navbar, dropdown);
        },

        "Logicmoo": function(navbar, dropdown) {
          $("body").swish('populateExtendedExamples', navbar, dropdown,
            config.http.locations.swish_extended_examples + "/logicmoo");
        },
        "PrologMUD": function(navbar, dropdown) {
          $("body").swish('populateExtendedExamples', navbar, dropdown,
            config.http.locations.swish_extended_examples + "/prologmud");
        },
        "LPS": function(navbar, dropdown) {
          $("body").swish('populateExtendedExamples', navbar, dropdown,
            config.http.locations.swish_extended_examples + "/lps_corner");
        },
        "PFC": function(navbar, dropdown) {
          $("body").swish('populateExtendedExamples', navbar, dropdown,
            config.http.locations.swish_extended_examples + "/pfc");
        },
        "Aleph": function(navbar, dropdown) {
          $("body").swish('populateExtendedExamples', navbar, dropdown,
            config.http.locations.swish_extended_examples + "/aleph");
        },

        /*
        "CPLINT": function(navbar, dropdown) {
          $("body").swish('populateExtendedExamples', navbar, dropdown,
            config.http.locations.swish_extended_examples + "/learning");
        },

        "CPLINT-I": function(navbar, dropdown) {
          $("body").swish('populateExtendedExamples', navbar, dropdown,
            config.http.locations.swish_extended_examples + "/inference/*.swinb");
        },
        "CPLINT-IP": function(navbar, dropdown) {
          $("body").swish('populateExtendedExamples', navbar, dropdown,
            config.http.locations.swish_extended_examples + "/inference/*pl");
        },

        "Trill": function(navbar, dropdown) {
          $("body").swish('populateExtendedExamples', navbar, dropdown,
            config.http.locations.swish_extended_examples + "/trill");
        },

        "Phil": function(navbar, dropdown) {
          $("body").swish('populateExtendedExamples', navbar, dropdown,
            config.http.locations.swish_extended_examples + "/phil");
        },

        "LPS Survival": function(navbar, dropdown) {
          $("body").swish('populateExtendedExamples', navbar, dropdown,
            config.http.locations.swish_extended_examples + "/lps_corner/survival_game");
        },

        //     "LPS Testing": function(navbar, dropdown) {
        //     $("body").swish('populateExtendedExamples', navbar, dropdown, 
        //     config.http.locations.swish_extended_examples+"/lps_corner/forTesting");      },      

        //     "LPS CLOUT": function(navbar, dropdown) {
        //     $("body").swish('populateExtendedExamples', navbar, dropdown, 
        //     config.http.locations.swish_extended_examples+"/lps_corner/CLOUT_workshop");      },      

        "Top NB": function(navbar, dropdown) {
          $("body").swish('populateExtendedExamples', navbar, dropdown,
            config.http.locations.swish_extended_examples + "/*.swinb");
        },


        //     "Extended Examples": function(navbar, dropdown) {
        //     $("body").swish('populateExtendedExamples', navbar, dropdown, 
        //     config.http.locations.swish_extended_examples);      },      
            */
        "Help": function(navbar, dropdown) {
          $("body").swish('populateHelp', navbar, dropdown);
        },
        "Extensions Menu": {
          "Help on cplint...": function() {
            menuBroadcast("help", {
              file: "help-cplint.html"
            });
          },
          "Pldoc on cplint...": function() {
            var win = window.open("http://cplint.lamping.unife.it/pldoc/doc/home/trill/lib/swipl/pack/cplint/prolog/", '_blank');
            win.focus();
          },
          "Help on aleph...": function() {
            menuBroadcast("help", {
              file: "help-aleph.html"
            });
          },
          "PLP Tutorial": function() {
            var win = window.open("http://ds.ing.unife.it/~gcota/plptutorial/", '_blank');
            win.focus();
            //console.log("click on tutorial");
            //methods.playURL.call($("body"), {url:"/tutorial/tutorial.swinb"});
          },
        }
      }
    }; // defaults;


    /** @lends $.fn.swish */
    var methods = {
      /**
       * Initialise SWISH on the page. At this moment, a page can only
       * contain one SWISH application and swish is normally initialised
       * on the body.  This might change.
       * @example $("body").swish();
       * {Object} options
       * {Boolean} options.show_beware If `true`, show a dialogue box
       * telling this is a limited version.
       */
      _init: function(options) {

        if(!window.setupPanesOnce) {		
        swishLogo();
        setupModal();
        setupPanes();
        setupResize();
        setupUnload();
        // aboutLink();
        // $("#search").search();
		}

        options = options || {};
        this.addClass("swish");

        return this.each(function() {
          var elem = $(this);
          var data = {}; /* private data */

          $("#navbar").navbar(defaults.menu);
          $("#login").login();

          var editor = $(".prolog-editor").prologEditor({
            save: true
          });
          data.runner = $(".prolog-runners").prologRunners();
          data.query = $(".prolog-query").queryEditor({
            source: function() {
              return elem.swish('prologSource');
            },
            sourceID: function() {
              return editor.prologEditor('getSourceID');
            },
            examples: elem.swish('examples'),
            runner: data.runner,
            editor: editor[0]
          });
          elem.data(pluginName, data); /* store with element */
          data.restoring = true;

          $(".notebook").notebook();

          if (options.show_beware &&
            !(swish.option && swish.option.show_beware == false))
            menuBroadcast("help", {
              file: "beware.html",
              notagain: "beware"
            });

          if (window.location.href.indexOf("&togetherjs=") > 0)
            elem.swish('collaborate');

          $("#chat").chat('');
          $("#broadcast-bell")
            .chatbell({
              empty_title: "Click to open chat"
            });
          $("#chat-menu").on("click", "a", function(ev) {
            var a = $(ev.target).closest("a");
            switch (a.data('action')) {
              case 'chat-shared':
                $("body").swish('playFile', {
                  file: config.swish.hangout,
                  chat: 'large'
                });
                break;
              case 'chat-about-file':
                menuBroadcast("chat-about-file");
            }
          });

          setInterval(function() {
            $(".each-minute").trigger("minute");
          }, 60000);

          if (elem[pluginName]('preserve_state')) {
            $(".unloadable").trigger("restore");
          }

          delete data.restoring;
          elem[pluginName]('runDelayedRestore');
          $().version('checkForUpdates');
        });
      },

      /**
       * @return {Boolean} `true` when we should save and restore
       * the state to the browser local store.
       */
      preserve_state: function() {

	    var swish = this;
		if(swish.option == undefined) return false;

        if (swish.option.preserve_state == false)
          return false;
        if (preferences.getVal("preserve-state") == false)
          return false;

        function getQueryVariable(variable) {
          var query = window.location.search.substring(1);
          var vars = query.split('&');
          for (var i = 0; i < vars.length; i++) {
            var pair = vars[i].split('=');
            if (decodeURIComponent(pair[0]) == variable) {
              return decodeURIComponent(pair[1]);
            }
          }
        }

        if (getQueryVariable("restore") == "false")
          return false;

        return true;
      },

      afterRestore: function(f) {
        var data = this.data("swish");

        if (data.after_restore)
          data.after_restore.push(f);
        else
          data.after_restore = [f];

        return this;
      },

      runDelayedRestore: function() {
        var swish = this;
        var data = this.data("swish");

        if (data.after_restore) {
          var f;
          while ((f = data.after_restore.pop()))
            f.call(swish);
        }

        return this;
      },


      /**
       * Trigger a global event in SWISH.  Currently defined events are:
       *
       *   - `help`        -- show a modal help window
       *   - `source`      -- load a new source
       *   - `saveProgram` -- save the current program
       *
       * This method triggers all elements of class
       * `swish-event-receiver`.
       *
       * @param {String} name is the name of the trigger.
       * @param {Object|null} data provides additional data for the event.
       */
      trigger: function(name, data) {
        menuBroadcast(name, data);
        return this;
      },

      /**
       * Play a file from the webstore, loading it through ajax
       * @param {String|Object} options If a string, the name
       * of the file in the web storage
       * @param {String} options.file is the name of the file in the web
       * storage
       * @param {Number} [options.line] is the initial line number
       * @param {RegEx} [options.regex] search to highlight
       * @param {Boolean} [options.showAllMatches] Show other matches on
       * page.
       * @param {Boolean} [options.newTab] if `true`, open the file in
       * a new tab.
       * @param {Boolean} [options.noHistory] if `true`, do not push the
       * new document to the history.
       * @param {Object} [options.prompt] provided for trace events.  Must
       * be used to highlight the Prolog port at the indicated location.
       */
      playFile: function(options) {
        var elem = this;
        if (typeof(options) == "string")
          options = {
            file: options
          };

        var existing = this.find(".storage").storage('match', options);
        if (existing && existing.storage('expose', "Already open"))
          return this; /* FIXME: go to line */

        var url = config.http.locations.web_storage + options.file;
        $.ajax({
          url: url,
          type: "GET",
          data: {
            format: "json"
          },
          success: function(reply) {
            reply.url = url;
            reply.st_type = "gitty";

            function copyAttrs(names) {
              for (var i = 0; i < names.length; i++) {
                var name = names[i];
                if (options[name])
                  reply[name] = options[name];
              }
            }

            copyAttrs(["line",
              "regex", "showAllMatches",
              "newTab", "noHistory",
              "prompt", "chat"
            ]);

            elem.swish('setSource', reply);
          },
          error: function(jqXHR) {
            // modal.ajaxError(jqXHR);
          }
        });

        return this;
      },

      /**
       * Load file from a URL.  This fetches the data from the URL and
       * broadcasts a `"source"` event that is normally picked up by
       * the tabbed pane.
       * @param {Object}   options
       * @param {String}   options.url     URL to load.
       * @param {Integer} [options.line]   Line to go to.
       * @param {Regex}   [options.search] Text searched for.
       */
      playURL: function(options) {
        var elem = this;
        var existing = this.find(".storage").storage('match', options);

        if (existing && existing.storage('expose', "Already open"))
          return this; /* FIXME: go to line */

		//debugger;
        $.ajax({
          url: options.url,
          type: "GET",
          data: {
            format: "json"
          },
          success: function(source) {
            var msg;

            if (typeof(source) == "string") {
              msg = {
                data: source
              };
              msg.st_type = "external";
            } else if (typeof(source) == "object" &&
              typeof(source.data) == "string") {
              msg = source;
              msg.st_type = "filesys";
            } else {
              alert("Invalid data");
              return;
            }

            msg.url = options.url;

            function copyAttrs(names) {
              for (var i = 0; i < names.length; i++) {
                var name = names[i];
                if (options[name])
                  msg[name] = options[name];
              }
            }

            copyAttrs(["line",
              "regex", "showAllMatches",
              "newTab", "noHistory",
              "prompt"
            ]);

            elem.swish('setSource', msg);
          },
          error: function(jqXHR) {
            // modal.ajaxError(jqXHR);
          }
        });
      },

      /**
       * Open a source.  If we are in fullscreen mode and the current
       * object cannot be opened by the current fullscreen node, we
       * leave fullscreen mode.  Called by playFile and playURL.
       */
      setSource: function(src) {
        var st = this.swish('isFullscreen');

        if (!(st && st.storage('setSource', src))) {
          if (st)
            this.swish('exitFullscreen');
          this.find(".tabbed").tabbed('tabFromSource', src);
        }

        return this;
      },


      /**
       * @param {Object} ex
       * @param {String} ex.title is the title of the example
       * @param {String} ex.file is the (file) name of the example
       * @param {String} ex.href is the URL from which to download the
       * program.
       * @returns {Function|String} function that loads an example
       */
      openExampleFunction: function(ex) {
        var swish = this;

        if (ex.type == "divider") {
          return "--";
        } else if (ex.type == "store") {
          return function() {
            methods.playFile.call(swish, ex.file);
          };
        } else {
          return function() {
            methods.playURL.call(swish, {
              url: ex.href
            });
          };
        }
      },

      /**
       * Populate the examples dropdown of the navigation bar. This
       * method is used by the navigation bar initialization.
       * @param {Object} navbar is the navigation bar
       * @param {Object} dropdown is the examples dropdown
       */
      populateExamples: function(navbar, dropdown) {
        var that = this;

        that.off("examples-changed")
          .on("examples-changed", function() {
            $("#navbar").navbar('clearDropdown', dropdown);
            that.swish('populateExtendedExamples', navbar, dropdown, config.http.locations.swish_examples);
          });

        $("body").swish('populateExtendedExamples', navbar, dropdown,
          config.http.locations.swish_examples);

        return this;
      },


      /**
       * populateExtendedExamples
       */
      populateExtendedExamples: function(navbar, dropdown, where) {
        var that = this;
        $.ajax(where, {
          dataType: "json",
          success: function(data) {
            for (var i = 0; i < data.length; i++) {
              var ex = data[i];
              var title;
              var options;
			  
              if (ex.type == "group" || ex.type == "submenu") {
				  //debugger;
                title = ex.title || ex.file || ex.href;
                options = {};
                options.action = null;
                options.type = "submenu";
                options.items = ["a", "b", "c"];
				if(ex.items !== undefined) {
				   options.items = ex.items;
				}
                options.typeIcon = "folder";
                $("#navbar").navbar('appendDropdown', dropdown, title, options);
                continue;
                /*
                <li><a class="trigger left-caret"><span class="dropdown-icon glyphicon glyphicon-paperclip"></span>Open recent</a>
                  <ul class="dropdown-menu sub-menu" style="display: block;">
                      <li><a><span class="dropdown-icon type-icon swinb"></span>Hangout.swinb</a></li>
                      <li><a><span class="dropdown-icon type-icon pl"></span>fooo.pl</a></li>
                  </ul>
                </li>
                */
              }

              if (ex == "--" || ex.type == "divider") {
                title = "--";
                options = "--";
              } else {
                var name = ex.file || ex.href;
                if (!name) {

                  title = ex;
                  continue;
                  /*
                  options = that.swish('populateExamples', navbar, dropdown);
                  $("#navbar").navbar('extendDropdown', dropdown,
                      title, options);
                  continue;
                  */
                } else {
				   // debugger;
                  title = ex.title;
                  options = that.swish('openExampleFunction', ex);
                  if (name)
                    options.typeIcon = name.split('.').pop();
                }
              }
			  if(ex.typeIcon !== undefined) {
				 options.typeIcon = ex.typeIcon;
			  }
              $("#navbar").navbar('extendDropdown', dropdown, title, options);
            }
          },
          error: function(jqXHR1) {
             modal.ajaxError(jqXHR1);
          }
        });
        return this;
      },


      /**
       * Extended Help
       */
      populateExtendedHelp: function(navbar, dropdown) {
        var that = this;

        function openHelpFunction(help) {
          return function() {
            menuBroadcast("help", {
              file: help.file
            });
          };
        }

        $.ajax(config.http.locations.swish_extended_help_index, {
          dataType: "json",
          success: function(data) {
            for (var i = 0; i < data.length; i++) {
              var help = data[i];
              var title;
              var options;

              if (help == "--" || help.type == "divider") {
                title = "--";
                options = "--";
              } else {
                var name = help.file;
                title = help.title;
                options = openHelpFunction(help);
              }

              $("#navbar").navbar('extendDropdown', dropdown,
                title, options);
            }
          },
          error: function(jqXHR) {
            // modal.ajaxError(jqXHR);
          }
        });
        return this;
      },

      /**
       * Populate the help dropdown of the navigation bar. This
       * method is used by the navigation bar initialization.
       * @param {Object} navbar is the navigation bar
       * @param {Object} dropdown is the examples dropdown
       */
      populateHelp: function(navbar, dropdown) {
        var that = this;

        function openHelpFunction(help) {
          return function() {
            if (help.url !== undefined) {
              var win = window.open(help.url, '_blank');
              win.focus();
            } else
              menuBroadcast("help", {
                file: help.file
              });
          };
        }

        $.ajax(config.http.locations.swish_help_index, {
          dataType: "json",
          success: function(data) {
            for (var i = 0; i < data.length; i++) {
              var help = data[i];
              var title;
              var options;

              if (help == "--" || help.type == "divider") {
                title = "--";
                options = "--";
              } else {
                //var name = help.file;
                title = help.title;
                options = openHelpFunction(help);
              }

              $("#navbar").navbar('extendDropdown', dropdown,
                title, options);
            }
          },
          error: function(jqXHR) {
            // modal.ajaxError(jqXHR);
          }
        });
        return this;
      },


      /**
       * pick up all Prolog sources, preparing to execute a query. Currently
       * picks up:
       *
       *   - The `.text()` from all elements that match
       *   `".background.prolog.source"`
       *   - The source of the Prolog editor.  We need some notion of a
       *   _current_ Prolog editor.
       */
      prologSource: function() {
        var list = [];
        var src;

        if ((src = $(".prolog-editor").prologEditor('getSource', "source")))
          list.push(src);
        if ((src = $(".background.prolog.source").text()))
          list.push(src);

        return list.join("\n\n");
      },

      /**
       * Pick up all breakpoints.  Currently assumes a single source.
       * @param {String} pengineID is the pengine for which to set
       * the breakpoints.
       */
      breakpoints: function(pengineID) {
        return this.find(".prolog-editor")
          .prologEditor('getBreakpoints', pengineID) || [];
      },

      /**
       * @param {Object} [options]
       * @param {Boolean} [options.active=false] If `true`, only return
       * info on the active tab
       */
      tabData: function(options) {
        options = options || {};
        if (options.active) {
          return this.find(".tab-pane.active .storage").storage('getData', options);
        } else {
          return this.find(".storage").storage('getData', options);
        }
      },

      /**
       * Extract examples from `$(".examples.prolog").text()`.  If this
       * does not exist, it returns a function that extracts the examples
       * from the current Prolog source editor.
       * @param {Boolean} [onlyglobal] if `true`, only extract globally
       * listed examples.
       * @returns {Array.String|null|Function}
       */
      examples: function(onlyglobal) {
        var text = $(".examples.prolog").text();

        if (text) {
          return $().prologEditor('getExamples', text, false);
        } else if (onlyglobal != true) {
          return function() {
            return $(".prolog-editor").prologEditor('getExamples');
          };
        }
      },

      /**
       * Make DOM element fullscreen
       * @param {jQuery} node is the element to turn into fullscreen.
       * Currently this only works for a notebook.
       * @param {jQuery} main is the node getting the `fullscreen
       * hamburger` class.
       * @param {Boolean} [hide_navbar] if `true`, also hide
       * the navigation bar.
       */
      fullscreen: function(node, main, hide_navbar) {
        var swish = this;
        var content = this.find(".container.tile-top");
        var swishdata = this.data("swish");

        if (swishdata.restoring) {
          this[pluginName]('afterRestore', function() {
            swish.swish('fullscreen', node, main, hide_navbar);
          });
          return this;
        }

        if (!content.hasClass("fullscreen")) {
          if (hide_navbar == true ||
            (config.swish.fullscreen &&
              config.swish.fullscreen.hide_navbar == true))
            this[pluginName]('showNavbar', false);

          var data = this.data("fullscreen");
          if (!data) {
            data = {};
            this.data("fullscreen", data);
          }
          content.addClass("fullscreen");
          main = main || node;
          main.addClass("fullscreen hamburger");
          data.fullscreen_origin = node.parent()[0];
          data.fullscreen_main = main[0];
          $(content.children()[0]).hide();
          content.append(node);
          main.trigger('fullscreen', true);
        }

        return this;
      },

      /**
       * If some element is in fullscreen mode, revert
       * back to tabbed mode.
       * @return {Boolean} `true` if successful.
       */
      exitFullscreen: function() {
        var content = this.find(".container.tile-top");

        if (content.hasClass("fullscreen")) {
          var data = this.data("fullscreen");
          var node = $(content.children()[1]);
          var main = data.fullscreen_main;

          this[pluginName]('showNavbar', true);

          content.removeClass("fullscreen");
          $(data.fullscreen_main).removeClass("fullscreen hamburger");
          $(data.fullscreen_origin).append(node);
          data.fullscreen_origin = null;
          data.fullscreen_main = null;
          $(content.children()[0]).show();
          $(main).trigger('fullscreen', false);

          return true;
        }

        return false;
      },

      /**
       * Detect fullscreen mode
       * @return {jQuery} storage object that is running in fullscreen
       * mode.
       */
      isFullscreen: function() {
        var content = this.find(".container.tile-top");

        if (content.hasClass("fullscreen")) {
          var st = content.find(".storage");
          if (st.length != 0)
            return st;
        }
      },

      /**
       * Control visibility of the navbar
       * @param {Boolean} show controls whether or not the navbar
       * is visible.
       */
      showNavbar: function(show) {
        if (show) {
          $("nav.navbar").attr("style", "display:block !important")
        } else {
          $("nav.navbar").attr("style", "display:none !important")
        }
      },

      /**
       * Open TogetherJS after lazy loading.
       */
      collaborate: function() {
        var elem = this;
        $(this).attr("data-end-togetherjs-html", "End collaboration");
        require(["https://togetherjs.com/togetherjs-min.js"],
          function() {
            TogetherJS(elem);
          });
        return this;
      },

      /**
       * Show showUpdates
       */
      showUpdates: function(options) {
        modal.show({
          title: options.title || "Recent SWISH updates",
          body: function() {
            this.version(options);
          }
        });
      }
    }; // methods

    /**
     * General actions on SWISH are sent as triggers.  Any part of
     * the interface that is interested in events should add the class
     * `swish-event-receiver` and listen to the events in which it is
     * interested.
     */
    function menuBroadcast(event, data) {
      $(".swish-event-receiver").trigger(event, data);
    }

    /**
     * Turn elements with class `swish-logo` into the SWISH logo.
     */
    function swishLogo() {
      $(".swish-logo")
 /*
        .append($.el.b($.el.span({
            style: "color:darkblue"
          }, "LOGIC"),
          $.el.span({
            style: "color:maroon"
          }, "MOO")))
        .append($.el.b($.el.span({
            style: "color:darkblue"
          }, "+ cplint + TRILL "),
          $.el.span({
            style: "color:maroon"
          }, "on "),
          $.el.span({
            style: "color:darkblue"
          }, "SWI"),
          $.el.span({
            style: "color:maroon"
          }, "SH")))
        .append($.el.b($.el.span({
            style: "color:darkblue"
          }, " + LPS"),
          $.el.span({
            style: "color:maroon"
          }, " + PFC")))
*/
        .css("margin-left", "30px")
        .css("font-size", "24px")
        .addClass("navbar-brand");
    }

    /**
     * Setup modal actions.  Subsequently, modal dialogue windows
     * are opened by using the trigger `help`.
     * @example $("body").swish('action', 'help', {file:"about.html"});
     */
    function setupModal() {
      if ($("#modal").length == 0) {
        $("body").append($.el.div({
          id: "modal"
        }));
        $("#modal").swishModal();
      }
    }

    function aboutLink() {
      var el = document.getElementById('about');
      el.addEventListener('click', function() {
        $(el).swishModal('showHelp', {
          file: 'about.html'
        });
      });
    }

    /**
     * Setup the panes and allow for resizing them
     */
    function setupPanes() {
      window.setupPanesOnce = true;
      $(".tile").tile();
      $(window).resize(function() {
        $(".tile").tile('resize');
      });
      $(".tabbed").tabbed();
    }

    function setupResize() {
      $(window).resize(function() {
        $(".reactive-size").trigger('reactive-resize');
      });
    }

    function setupUnload() {
      $(window).bind("beforeunload", function(ev) {
        var rc;

        $(".unloadable").each(function() {
          var r = {};
          $(this).trigger("unload", r);
          rc = rc || r.rc;
        });

        return rc;
      });
    }

    /**
     * <Class description>
     *
     * @class swish
     * @tutorial jquery-doc
     * @memberOf $.fn
     * @param {String|Object} [method] Either a method name or the jQuery
     * plugin initialization object.
     * @param [...] Zero or more arguments passed to the jQuery `method`
     */

    $.fn.swish = function(method) {
      if (methods[method]) {
        return methods[method]
          .apply(this, Array.prototype.slice.call(arguments, 1));
      } else if (typeof method === 'object' || !method) {
        return methods._init.apply(this, arguments);
      } else {
        $.error('Method ' + method + ' does not exist on jQuery.' + pluginName);
      }
    };
  $.fn.swish.methods = methods;
  }(jQuery));

	 return {
	   swish: $("body"),
	   trigger: function(name, data) {
	     this.swish.swish('trigger', name, data);
	   }
	 };

}); // define()