## @package dataset # Module caffe2.python.dataset """ Implementation of an in-memory dataset with structured schema. Use this to store and iterate through datasets with complex schema that fit in memory. Iterating through entries of this dataset is very fast since the dataset is stored as a set of native Caffe2 tensors, thus no type conversion or deserialization is necessary. """ from caffe2.python import core, workspace from caffe2.python.dataio import Reader, Writer from caffe2.python.schema import ( Struct, from_blob_list, from_column_list, InitEmptyRecord) import numpy as np class _DatasetReader(Reader): def __init__(self, dataset, name, batch_size=1, enforce_batch_size=False): """Don't call this directly. Instead, use dataset.reader()""" Reader.__init__(self, dataset.content()) self.dataset = dataset self.name = name or (dataset.name + '_cursor') self.batch_size = batch_size self.enforce_batch_size = enforce_batch_size self.cursor = None def setup_ex(self, init_net, exit_net): if self.cursor is None: self.cursor = init_net.CreateTreeCursor( [], init_net.NextScopedBlob(self.name), fields=self.dataset.fields) def read(self, read_net): assert self.cursor, 'setup not called.' content = self.dataset.content() with core.NameScope(read_net.NextName(self.name)): fields = read_net.ReadNextBatch( [self.cursor] + content.field_blobs(), content.field_names(), batch_size=self.batch_size, enforce_batch_size=self.enforce_batch_size) fields = core.output_to_list(fields) return (read_net.IsEmpty([fields[0]]), fields) def reset(self, net): net.ResetCursor([self.cursor], []) class _DatasetRandomReader(Reader): def __init__(self, dataset, name, indices, batch_size=1, loop_over=False, enforce_batch_size=False): """Don't call this directly. Instead, use dataset.random_reader()""" Reader.__init__(self, dataset.content()) self.dataset = dataset self.cursor = None self.name = name or (dataset.name + '_cursor') self.indices = indices self.batch_size = batch_size self.loop_over = loop_over self.enforce_batch_size = enforce_batch_size def setup_ex(self, init_net, exit_net): if self.cursor is None: self.cursor = init_net.CreateTreeCursor( [], init_net.NextScopedBlob(self.name), fields=self.dataset.fields) def reset(self, net): net.ResetCursor([self.cursor], []) def computeoffset(self, net): self.reset(net) offsets = net.ComputeOffset( [self.cursor] + self.dataset.content().field_blobs(), 'offsets') self.offsets = offsets def sort_and_shuffle(self, net, sort_by_field=None, shuffle_size=1, batch_size=1): # no sorting by default content = self.dataset.content() sort_by_field_idx = -1 if sort_by_field: assert sort_by_field in content.field_names(), ( 'Must be valid field.') sort_by_field_idx = content.field_names().index(sort_by_field) self.reset(net) indices = net.SortAndShuffle( [self.cursor] + content.field_blobs(), 'indices', sort_by_field_idx=sort_by_field_idx, shuffle_size=shuffle_size, batch_size=batch_size) self.indices = indices def read(self, read_net): assert self.cursor, 'setup_ex not called' assert self.indices, 'sort_and_shuffle not called' assert self.offsets, 'computeoffset not called' content = self.dataset.content() with core.NameScope(read_net.NextName(self.name)): fields = read_net.ReadRandomBatch( [self.cursor, self.indices, self.offsets] + ( content.field_blobs()), content.field_names(), batch_size=self.batch_size, enforce_batch_size=self.enforce_batch_size, loop_over=self.loop_over) fields = core.output_to_list(fields) return (read_net.IsEmpty([fields[0]]), fields) class _DatasetWriter(Writer): def __init__(self, content): """Don't call this directly. Use dataset.writer() instead.""" self._content = content self.mutex = None def setup_ex(self, init_net, exit_net): if self.mutex is None: self.mutex = init_net.CreateMutex([]) def write(self, writer_net, fields): """ Add operations to `net` that append the blobs in `fields` to the end of the dataset. An additional operator will also be added that checks the consistency of the data in `fields` against the dataset schema. Args: writer_net: The net that will contain the Append operators. fields: A list of BlobReference to be appeneded to this dataset. """ assert self.mutex is not None, 'setup not called.' field_blobs = self._content.field_blobs() assert len(fields) == len(field_blobs), ( 'Expected %s fields, got %s.' % (len(field_blobs), len(fields))) writer_net.CheckDatasetConsistency( fields, [], fields=self._content.field_names()) writer_net.AtomicAppend( [self.mutex] + field_blobs + list(fields), field_blobs) def commit(self, finish_net): """Commit is a no-op for an in-memory dataset.""" pass def Const(net, value, dtype=None, name=None): """ Create a 'constant' by first creating an external input in the given net, and then feeding the corresponding blob with its provided value in the current workspace. The name is automatically generated in order to avoid clashes with existing blob names. """ assert isinstance(net, core.Net), 'net must be a core.Net instance.' value = np.array(value, dtype=dtype) blob = net.AddExternalInput(net.NextName(prefix=name)) workspace.FeedBlob(str(blob), value) return blob def execution_step_with_progress(name, init_net, substeps, rows_read): # progress reporter report_net = core.Net('report_net') report_net.Print([rows_read], []) return core.execution_step( name, substeps, report_net=report_net, concurrent_substeps=True, report_interval=5) class Dataset(object): """Represents an in-memory dataset with fixed schema. Use this to store and iterate through datasets with complex schema that fit in memory. Iterating through entries of this dataset is very fast since the dataset is stored as a set of native Caffe2 tensors, thus no type conversion or deserialization is necessary. """ def __init__(self, fields, name=None): """Create an un-initialized dataset with schema provided by `fields`. Before this dataset can be used, it must be initialized, either by `init_empty` or `init_from_dataframe`. Args: fields: either a schema.Struct or a list of field names in a format compatible with the one described in schema.py. name: optional name to prepend to blobs that will store the data. """ assert isinstance(fields, list) or isinstance(fields, Struct), ( 'fields must be either a Struct or a list of raw field names.') if isinstance(fields, list): fields = from_column_list(fields) self.schema = fields self.fields = fields.field_names() self.field_types = fields.field_types() self.name = name or 'dataset' self.field_blobs = fields.field_blobs() if fields.has_blobs() else None def trim(self, net, multiple_of): """ Trims the contents of this dataset so that the number of records is multiple of the given argument. """ net.TrimDataset( self.field_blobs, self.field_blobs, fields=self.fields, multiple_of=multiple_of) def init_empty(self, init_net): """Initialize the blobs for this dataset with empty values. Empty arrays will be immediately fed into the current workspace, and `init_net` will take those blobs as external inputs. """ self.field_blobs = InitEmptyRecord( init_net, self.schema.clone_schema()).field_blobs() def init_from_dataframe(self, net, dataframe): """Initialize the blobs for this dataset from a Pandas dataframe. Each column of the dataframe will be immediately fed into the current workspace, and the `net` will take this blobs as external inputs. """ assert len(self.fields) == len(dataframe.columns) self.field_blobs = [ Const(net, dataframe.as_matrix([col]).flatten(), name=field) for col, field in enumerate(self.fields)] def get_blobs(self): """ Return the list of BlobReference pointing to the blobs that contain the data for this dataset. """ assert self return self.field_blobs def content(self): """ Return a Record of BlobReferences pointing to the full content of this dataset. """ return from_blob_list(self.schema, self.field_blobs) def field_names(self): """Return the list of field names for this dataset.""" return self.fields def field_types(self): """ Return the list of field dtypes for this dataset. If a list of strings, not a schema.Struct, was passed to the constructor, this will return a list of dtype(np.void). """ return self.field_types def reader(self, init_net=None, cursor_name=None, batch_size=1, enforce_batch_size=False): """Create a Reader object that is used to iterate through the dataset. This will append operations to `init_net` that create a TreeCursor, used to iterate through the data. NOTE: Currently, it is not safe to append to a dataset while reading. Args: init_net: net that will be run once to create the cursor. cursor_name: optional name for the blob containing a pointer to the cursor. batch_size: how many samples to read per iteration. Returns: A _DatasetReader that can be used to create operators that will iterate through the dataset. """ assert self.field_blobs, 'Dataset not initialized.' reader = _DatasetReader(self, cursor_name, batch_size, enforce_batch_size) if init_net is not None: reader.setup_ex(init_net, None) return reader def random_reader(self, init_net=None, indices=None, cursor_name=None, batch_size=1, loop_over=False, enforce_batch_size=False): """Create a Reader object that is used to iterate through the dataset. NOTE: The reader order depends on the order in indices. Args: init_net: net that will be run once to create the cursor. indices: blob of reading order cursor_name: optional name for the blob containing a pointer to the cursor. batch_size: how many samples to read per iteration. loop_over: repeat the dataset indefinitely (in the same order) Returns: A DatasetReader that can be used to create operators that will iterate through the dataset according to indices. """ assert self.field_blobs, 'Dataset not initialized.' reader = _DatasetRandomReader( self, cursor_name, indices, batch_size, loop_over, enforce_batch_size) if init_net is not None: reader.setup_ex(init_net, None) return reader def writer(self, init_net=None): """Create a Writer that can be used to append entries into the dataset. NOTE: Currently, it is not safe to append to a dataset while reading from it. NOTE: Currently implementation of writer is not thread safe. TODO: fixme Args: init_net: net that will be run once in order to create the writer. (currently not used) """ assert self.field_blobs, 'Dataset not initialized.' writer = _DatasetWriter(self.content()) if init_net is not None: writer.setup_ex(init_net, None) return writer