% ```prolog
:- use_module(library(logicmoo_utils)).
% facts for creating predcatres
extracted_predicate(transposon, [primaryId, symbol, sequence, url, taxonId, soTermId]).
extracted_predicate(transposon_publications, [primaryId, publications]).
extracted_predicate(transposon_synonyms, [primaryId, symbolSynonyms]).
extracted_predicate(transposon_cross_references, [primaryId, crossReferenceIds]).
extracted_predicate(gene, [primaryId,
gene_geneId, gene_symbol, gene_url, gene_locusTag, gene_name]).
extracted_predicate(N,[gene_geneId,N]):-
member(M,[symbol, url, locusTag, name, synonyms]), atom_concat('gene_',M,N).
extracted_predicate(exon_locations,
[primaryId,
genomeLocations_assembly,
genomeLocations_gca_accession,
exons_INSDC_accession, exons_chromosome, exons_strand,
exons_startPosition,
exons_endPosition]).
extracted_predicate(relatedSequences,[primaryId,relatedSequences_sequenceId,
relatedSequences_relationship]).
extracted_predicate(gene_synonyms, [gene_geneId, gene_synonyms]).
%extracted_predicate(exon, [primaryId, geneId, 'INSDC_accession', chromosome, strand, startPosition, endPosition]).
extracted_predicate(metadata, [dataProvider, schemaVersion, release, genomicCoordinateSystem, dateProduced]).
%extracted_predicate(exon_locations, [ assembly, chromosome, strand, startPosition, endPosition]).
extracted_predicate(N,[fbid,M]):-
member(M,[transposons, common_terms, major_stages, major_tissues, name,
pubs, rex_gene, stocks, expression_desc_text, images]), atom_concat('allele_',M,N).
extracted_predicate(allele_image,[fbid,images,images_imageDescription,
images_publicationId, images_pubFigure, images_permission]).
extracted_predicate(allele_image2,
[fbid,images,
imageDescription, publicationId,
pubFigure, permission]).
extracted_predicate(allele_image3,
[fbid, images_imageDescription,
images_publicationId,
images_pubFigure, images_permission]).
wdmsg_json(G):- nop(fbug(G)).
note_doing(P):- wdmsg_json(P),!,call(user:P).
assert_JSON(P):- note_doing(assert_OBO(P)).
:- ensure_loaded(flybase_main).
:- ensure_loaded(ext_loader_obo).
%:- listing(assert_OBO/1).
:- dynamic json_kv/2.
% Base case: an empty curly structure.
mapcurly_or_list(_, {}):-!.
mapcurly_or_list(_, []):-!.
mapcurly_or_list(Pred, [H|T]) :- !, call(Pred, H), mapcurly_or_list(Pred, T).
mapcurly_or_list(Pred, {H,T}):- !, call(Pred, H), mapcurly_or_list(Pred, T).
mapcurly_or_list(Pred, {H}) :- !, call(Pred, H).
simple_first(R,_=AA,_=BB):-!, simple_first(R,AA,BB).
simple_first('<',AA,BB):- BB=json(_),AA\=json(_),!.
simple_first('>',AA,BB):- AA=json(_),BB\=json(_),!.
simple_first(R,AA,BB):-!, compare(R,AA,BB).
prefix_key([O|_],Kee,Key):- atom(O), !,
prefix_key(O,Kee,Key).
prefix_key(O,Kee,Key) :- atom(O),
O\==Kee, O\==data,symbolic_list_concat([O,'_',Kee],Key),!.
prefix_key(_,Key,Key).
:- use_module(library(http/json)).
load_flybase_json(_Fn,File):-
process_json_file(File).
process_json_file(File):- atom_concat(File,'.metta_x',MXFile),process_json_file(File,MXFile).
process_json_file(_File,MXFile):- fail, exists_file(MXFile),!,process_metta_x_file(MXFile).
process_json_file(File, MXFile):- fail, exists_file(File),!,
setup_call_cleanup(
open(MXFile,write,Strm,[]),
setup_call_cleanup(
set_stream(Strm,alias(metta_x_output)),
with_option(make_metta_x,'True',process_json_file_direct(File)),
set_stream(current_output,alias(metta_x_output))),
close(Strm)),
remove_duplicates(MXFile),
process_metta_x_file(MXFile).
process_json_file(File, _):- process_json_file_direct(File),!.
process_json_file(File, MXFile):-
throw(process_json_file(File, MXFile)).
process_json_file_direct(File):-
setup_call_cleanup(
open(File, read, Stream,[encoding(utf8)]),
json_read(Stream, JSONDict),
close(Stream)),
process_json([],JSONDict).
process_json(JsonString):- process_json([],JsonString),!.
process_json(O,JsonString) :- atomic(JsonString), !,
atom_json_term(JsonString, Json, []), process_json(O,Json).
process_json(O,json(Values)) :- !, process_json(O,Values).
process_json(O,K=json(Values)) :- !, process_json([K|O],Values).
process_json(O,Values) :- is_list(Values),!,maplist(with_json1(O),Values).
process_json(O,Values) :- with_json1(O,Values),!.
with_json1(O,K=Values) :- K==driver,!, with_json1(O,Values).
with_json1(O,K=Values) :-!, with_json1([K|O],Values).
with_json1(O,Values) :- is_list(Values),!,maplist(with_json1(O),Values).
with_json1(O,json([driver=json(Values0)])) :- !,with_json2(O,Values0),!.
with_json1(O,json(Values0)) :- is_list(Values0),!,with_json2(O,Values0),!.
with_json1(O,Val):- fbug(error(O=Val)),!.
with_json2([metaData],_Values0):-!.
with_json2(O,Values):-
retractall(seen_arg(_,_)),
with_json3(O,Values),
ignore((seen_arg(_,_),
fbug(Values),
listing(seen_arg/2))).
with_json3(O,Values0):-
retractall(json_kv(_,_)),
with_json4(O,Values0),
retractall(json_kv(_,_)),!.
with_json4(O,[json(Values)]):- !, with_json4(O,Values).
with_json4(O,json(Values)):- !, with_json4(O,Values).
with_json4(O,Values0):-
predsort(simple_first,Values0,Values),
wdmsg_json(O==Values),
ignore(maplist(with_entry(O,assert),Values)).
with_entry(O,AR, Key=Value):-!, with_kv([Key|O],AR,Key,Value).
%with_entry(O,assert,JSON) :- !, process_json(O,JSON).
with_entry(O,AR,JSON):- fbug(error_with_entry(O,AR,JSON)).
uses_id_subprops(images).
key_can_nv(M):-
member(M,[major_stages, major_tissues, name, rex_gene, insertions,transposons,
%expression_desc_text, images,
pubs, stocks]).
is_field(Field):- extracted_predicate(_,List), \+ \+ member(Field,List),!.
with_kv_maybe_more(_O,_AR,_Key,json([])):-!.
with_kv_maybe_more(O,AR,Key,Do):- with_kv(O,AR,Key,Do),!.
assert_id_about(O,Key,ID,NVAboutID):-
with_json4([Key|O],[Key=ID|NVAboutID]).
%images= json( [ 'FBal0040476_1.jpg'= json( [ imageDescription='GAL4[Bx-MS1096].jpg',
with_kv(O,AR,Key,json([ID=json(NVAboutID)|More])):- uses_id_subprops(Key),
%wdmsg_json(cr1(Key)=ID),
atom(ID),!,
decl_type(ID,Key),
with_kv(O,AR,Key,ID),
assert_id_about(O,Key,ID,NVAboutID),
with_kv_maybe_more(O,AR,Key,json(More)).
with_kv(O,AR,Key,json([ID=Value|More])):- key_can_nv(Key),
atom(Value),
% prefix_key(O,ID,Field), \+ is_field(Field),!,
%prefix_key(O,Value,VField), \+ is_field(VField),!,
decl_type(ID,Key),
with_kv(O,AR,Key,ID),
%atom_concat(Key,'_name',Pred),
%Pred = object_name,
assert_JSON([name,ID,Value]),
with_kv_maybe_more(O,AR,Key,json(More)).
with_kv(O,AR,OK,Key=Values):- !, with_kv([OK|O],AR,Key,Values).
with_kv(O,AR,Key,json(Values)):- !, with_kv(O,AR,Key,Values).
with_kv(O,AR,Key,Value):- is_list(Value),Value\==[],!,
maplist(with_kv(O,AR,Key),Value).
with_kv(O,AR,Kee,Value):-
prefix_key(O,Kee,Key),
retractall(json_kv(Key,_)),
KV = json_kv(Key,Value),
decl_seen(Value,Key),
Do =.. [AR,KV],
call(Do),
ignore((AR==assert,
%wdmsg_json(cr(Key)=Value),
check_ready(Key))).
check_ready(Key):-
forall((extracted_predicate(P,List),memberchk(Key,List)),
(length(List,Len),
ignore((findall(Arg,(member(K,List),json_kv(K,Arg)),ArgList),
length(ArgList,Len),
Fact = [P|ArgList],
assert_JSON(Fact),
maplist(decl_type,ArgList,List))))).
% Rows 937,381,148
:- dynamic(arg_typed/2).
:- dynamic(seen_arg/2).
decl_type(Arg,Type):- retractall(seen_arg(Arg,_)),arg_typed(Arg,Type),wdmsg_json(arg_typed(Arg,Type)),!.
decl_type(Arg,Type):- assert(arg_typed(Arg,Type)),!,assert_JSON([Type,Arg]).
decl_seen(Arg,_):- seen_arg(Arg,_),!.
decl_seen(Arg,_):- arg_typed(Arg,_),!.
decl_seen(Arg,Type):- assert(seen_arg(Arg,Type)),!.
err
:- process_json(json([metaData= json( [ dataProvider='FlyBase',
publications=['PMID:35266522'], schemaVersion='0.4.0',release=fb_2023_04,
genomicCoordinateSystem='1-start, fully-closed',
dateProduced='2023-07-25T03:20:14+00:00']),
data= [ json( [ primaryId='FBtr0070001',
symbol='tRNA:Pro-CGG-1-1-RA',
sequence='GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTCGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCC',
url='http://flybase.org/reports/FBtr0070001.html',
symbolSynonyms=['CR32826-RA','tRNA:CR32826-RA'], taxonId='NCBITaxon:7227',soTermId='SO:0000253',
genomeLocations= [ json( [ assembly='R6',
gca_accession='GCA_000001215.4',
exons= [ json( [ 'INSDC_accession'='AE014298.5', chromosome='X',strand=(+),
startPosition=20025099,endPosition=20025170])]])],
gene= json( [ geneId='FBgn0052826',
symbol='tRNA:Pro-CGG-1-1',
url='http://flybase.org/reports/FBgn0052826.html',
locusTag='Dmel_CR32826',
synonyms=['tRNA:P:CGG:AE002611'],
name='transfer RNA:Proline-CGG 1-1']),
publications=['PMID:26673694']]),
json( [ primaryId='FBtr0070292',
symbol='snoRNA:M-RA',
sequence='AATTCAATGATTTCAACTTATTCTAATACACAC',
url='http://flybase.org/reports/FBtr0070292.html', taxonId='NCBITaxon:7227',soTermId='SO:0000275',
crossReferenceIds=['REFSEQ:NR_002093.1'],
genomeLocations= [ json( [ assembly='R6',
gca_accession='GCA_000001215.4',
exons= [ json( [ 'INSDC_accession'='AE014298.5', chromosome='X',strand=(-),
startPosition=1482492,endPosition=1482590])]])],
gene= json( [ geneId='FBgn0044508',
symbol='snoRNA:M',
url='http://flybase.org/reports/FBgn0044508.html',
locusTag='Dmel_CR32807', synonyms=['CR32807'],name='snoRNA:M'])]),
json( [ primaryId='FBtr0308931',
symbol='lncRNA:CR33218-RC',
sequence='ACGAAATCAATAAACATTTGTACCTTT',
url='http://flybase.org/reports/FBtr0308931.html',
symbolSynonyms=['CR33218-RC'], taxonId='NCBITaxon:7227',soTermId='SO:0001877',
crossReferenceIds=['REFSEQ:NR_047742.1'],
genomeLocations= [ json( [ assembly='R6',
gca_accession='GCA_000001215.4',
exons= [ json( [ 'INSDC_accession'='AE014298.5', chromosome='X',strand=(+),
startPosition=2330159,endPosition=2330355]),
json( [ 'INSDC_accession'='AE014298.5', chromosome='X',strand=(+),
startPosition=2330413,endPosition=2330826])]])],
gene= json( [ geneId='FBgn0053218',
symbol='lncRNA:CR33218',
url='http://flybase.org/reports/FBgn0053218.html',
locusTag='Dmel_CR33218',
synonyms=['CG2854','CG33218','CR33218','CT9762'],
name='long non-coding RNA:CR33218'])]),
json( [ primaryId='FBtr0070634', symbol='lncRNA:roX1-RA',sequence='TTGTAGAACAATTACTATA',
url='http://flybase.org/reports/FBtr0070634.html',
symbolSynonyms=['roX1-RA','roX1-RA....'], taxonId='NCBITaxon:7227',soTermId='SO:0001877',
crossReferenceIds=['REFSEQ:NR_002098.2'],
genomeLocations= [ json( [ assembly='R6',
gca_accession='GCA_000001215.4',
exons= [ json( [ 'INSDC_accession'='AE014298.5', chromosome='X',strand=(-),
startPosition=3858940,endPosition=3862697])]])],
gene= json( [ geneId='FBgn0019661',
symbol='lncRNA:roX1',
url='http://flybase.org/reports/FBgn0019661.html',
locusTag='Dmel_CR32777',
synonyms= [ 'BcDNA:GH10432', 'CR32777','EG:EG0002.2','RoX1',
'chrX:3706836..3706970',rox1],
name='long non-coding RNA on the X 1']),
publications=['PMID:10445033','PMID:12446910','PMID:9038336','PMID:9038337']])] ])).
err
:- process_json([],'
{
"metaData": {
"dataProvider": "FlyBase",
"publications": [
"PMID:35266522"
],
"schemaVersion": "0.4.0",
"release": "fb_2023_04",
"genomicCoordinateSystem": "1-start, fully-closed",
"dateProduced": "2023-07-25T03:20:14+00:00"
},
"data": [
{
"primaryId": "FBtr0070001",
"symbol": "tRNA:Pro-CGG-1-1-RA",
"sequence": "GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTCGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCC",
"url": "http://flybase.org/reports/FBtr0070001.html",
"symbolSynonyms": [
"CR32826-RA",
"tRNA:CR32826-RA"
],
"taxonId": "NCBITaxon:7227",
"soTermId": "SO:0000253",
"genomeLocations": [
{
"assembly": "R6",
"gca_accession": "GCA_000001215.4",
"exons": [
{
"INSDC_accession": "AE014298.5",
"chromosome": "X",
"strand": "+",
"startPosition": 20025099,
"endPosition": 20025170
}
]
}
],
"gene": {
"geneId": "FBgn0052826",
"symbol": "tRNA:Pro-CGG-1-1",
"url": "http://flybase.org/reports/FBgn0052826.html",
"locusTag": "Dmel_CR32826",
"synonyms": [
"tRNA:P:CGG:AE002611"
],
"name": "transfer RNA:Proline-CGG 1-1"
},
"publications": [
"PMID:26673694"
]
},
{
"primaryId": "FBtr0070292",
"symbol": "snoRNA:M-RA",
"sequence": "AATTCAATGATTTCAACTTATTCTAATACACAC",
"url": "http://flybase.org/reports/FBtr0070292.html",
"taxonId": "NCBITaxon:7227",
"soTermId": "SO:0000275",
"crossReferenceIds": [
"REFSEQ:NR_002093.1"
],
"genomeLocations": [
{
"assembly": "R6",
"gca_accession": "GCA_000001215.4",
"exons": [
{
"INSDC_accession": "AE014298.5",
"chromosome": "X",
"strand": "-",
"startPosition": 1482492,
"endPosition": 1482590
}
]
}
],
"gene": {
"geneId": "FBgn0044508",
"symbol": "snoRNA:M",
"url": "http://flybase.org/reports/FBgn0044508.html",
"locusTag": "Dmel_CR32807",
"synonyms": [
"CR32807"
],
"name": "snoRNA:M"
}
},
{
"primaryId": "FBtr0308931",
"symbol": "lncRNA:CR33218-RC",
"sequence": "ACGAAATCAATAAACATTTGTACCTTT",
"url": "http://flybase.org/reports/FBtr0308931.html",
"symbolSynonyms": [
"CR33218-RC"
],
"taxonId": "NCBITaxon:7227",
"soTermId": "SO:0001877",
"crossReferenceIds": [
"REFSEQ:NR_047742.1"
],
"genomeLocations": [
{
"assembly": "R6",
"gca_accession": "GCA_000001215.4",
"exons": [
{
"INSDC_accession": "AE014298.5",
"chromosome": "X",
"strand": "+",
"startPosition": 2330159,
"endPosition": 2330355
},
{
"INSDC_accession": "AE014298.5",
"chromosome": "X",
"strand": "+",
"startPosition": 2330413,
"endPosition": 2330826
}
]
}
],
"gene": {
"geneId": "FBgn0053218",
"symbol": "lncRNA:CR33218",
"url": "http://flybase.org/reports/FBgn0053218.html",
"locusTag": "Dmel_CR33218",
"synonyms": [
"CG2854",
"CG33218",
"CR33218",
"CT9762"
],
"name": "long non-coding RNA:CR33218"
}
},
{
"primaryId": "FBtr0070634",
"symbol": "lncRNA:roX1-RA",
"sequence": "TTGTAGAACAATTACTATA",
"url": "http://flybase.org/reports/FBtr0070634.html",
"symbolSynonyms": [
"roX1-RA"
],
"taxonId": "NCBITaxon:7227",
"soTermId": "SO:0001877",
"crossReferenceIds": [
"REFSEQ:NR_002098.2"
],
"genomeLocations": [
{
"assembly": "R6",
"gca_accession": "GCA_000001215.4",
"exons": [
{
"INSDC_accession": "AE014298.5",
"chromosome": "X",
"strand": "-",
"startPosition": 3858940,
"endPosition": 3862697
}
]
}
],
"gene": {
"geneId": "FBgn0019661",
"symbol": "lncRNA:roX1",
"url": "http://flybase.org/reports/FBgn0019661.html",
"locusTag": "Dmel_CR32777",
"synonyms": [
"BcDNA:GH10432",
"CR32777",
"EG:EG0002.2",
"RoX1",
"chrX:3706836..3706970",
"rox1"
],
"name": "long non-coding RNA on the X 1"
},
"publications": [
"PMID:10445033",
"PMID:12446910",
"PMID:9038336",
"PMID:9038337"
]
}
]
}
}').
err
:- process_json([],'
{
"metaData": {
"dataProvider": "FlyBase",
"title": "Frequently Used GAL4 Table",
"dateProduced": "2023-07-24T23:20:12-04:00",
"databaseRelease": "2023_04",
"annotationRelease": "R6.53"
},
"data": [
{"driver": {
"name": "Scer\\GAL4dpp.blk1",
"fbid": "FBal0040480",
"images": {
"FBal0040480_1.png": {
"imageDescription": "GAL4[dpp.blk1].png",
"publicationId": "FBrf0218242",
"pubFigure": "Figure 5A",
"permission": ""
}
},
"pubs": {
"FBrf0074522": "Staehling-Hampton et al., 1994, Cell Growth Diffn 5(6): 585--593",
"FBrf0076140": "Wilder and Perrimon, 1995, Development 121(2): 477--488",
"FBrf0084454": "Treisman and Rubin, 1995, Development 121(11): 3519--3527",
"FBrf0086426": "Grimm and Pflugfelder, 1996, Science 271(5255): 1601--1604",
"FBrf0087557": "Lecuit et al., 1996, Nature 381(6581): 387--393",
"FBrf0087626": "Nellen et al., 1996, Cell 85(3): 357--368",
"FBrf0087630": "Ng et al., 1996, Nature 381(6580): 316--318",
"FBrf0088035": "Burke and Basler, 1996, Development 122(7): 2261--2269",
"FBrf0088295": "Kim et al., 1996, Nature 382(6587): 133--138",
"FBrf0089604": "Brook and Cohen, 1996, Science 273(5280): 1373--1377",
"FBrf0089753": "Morimura et al., 1996, Dev. Biol. 177(1): 136--151",
"FBrf0091093": "Johnston and Schubiger, 1996, Development 122(11): 3519--3529",
"FBrf0091111": "Leevers et al., 1996, EMBO J. 15(23): 6584--6594",
"FBrf0091167": "Shen and Mardon, 1997, Development 124(1): 45--52",
"FBrf0091298": "Gonzalez-Crespo and Morata, 1996, Development 122(12): 3921--3928",
"FBrf0091412": "Theisen et al., 1996, Development 122(12): 3939--3948",
"FBrf0092493": "Chanut and Heberlein, 1997, Development 124(2): 559--567",
"FBrf0092641": "Neumann and Cohen, 1997, Development 124(4): 871--880",
"FBrf0093060": "Aplin and Kaufman, 1997, Mech. Dev. 62(1): 51--60",
"FBrf0251844": "Matsuda et al., 2021, Nat. Commun. 12(1): 6435",
"FBrf0252066": "Kinsey et al., 2021, G3 (Bethesda) 11(12): jkab350",
"FBrf0253453": "Lu et al., 2022, Int. J. Mol. Sci. 23(9): 4543",
"FBrf0253792": "Akiyama et al., 2022, Dev. Biol. 488: 91--103",
"FBrf0255082": "Inoshita et al., 2022, iScience 25(12): 105476",
"FBrf0255366": "Bharti et al., 2023, Proc. Natl. Acad. Sci. U.S.A. 120(2): e2211189119",
"FBrf0256654": "He et al., 2023, Development 150(11): dev201297"
},
"rex_gene": {
"FBgn0000490": "dpp"
},
"common_terms": "A/P boundary",
"major_stages": {
"FBdv00005336": "larval stage"
},
"major_tissues": {
"FBbt00111520": "anterior-posterior compartment boundary of imaginal disc",
"FBbt00001769": "eye disc morphogenetic furrow"
},
"transposons": {
"FBtp0000365": "P{GAL4-dpp.blk1}"
},
"expression_desc_text": "Drives expression at the anterior/posterior compartment boundary of imaginal discs, and at the morphogenetic furrow of the eye disc.",
"stocks": {
"FBst0305049": "106380",
"FBst0001553": "1553",
"FBst0067066": "67066",
"FBst0084296": "84296",
"FBst0084316": "84316",
"FBst0084337": "84337",
"FBst0093385": "93385"
}
}
},
{
"driver": {
"name": "Scer\\GAL4Ir25a.PA",
"fbid": "FBal0249373",
"images": null,
"pubs": {
"FBrf0212725": "Abuin et al., 2011, Neuron 69(1): 44--60",
"FBrf0215822": "Silbering et al., 2011, J. Neurosci. 31(38): 13357--13375",
"FBrf0221182": "Min et al., 2013, Proc. Natl. Acad. Sci. U.S.A. 110(14): E1321--E1329",
"FBrf0230271": "Chen et al., 2015, Nature 527(7579): 516--520",
"FBrf0232388": "Enjin et al., 2016, Curr. Biol. 26(10): 1352--1358",
"FBrf0236232": "Frank et al., 2017, Curr. Biol. 27(15): 2381--2388.e4",
"FBrf0236716": "Chen and Amrein, 2017, Curr. Biol. 27(18): 2741--2750.e4",
"FBrf0236934": "Rist and Thum, 2017, J. Comp. Neurol. 525(18): 3865--3889",
"FBrf0237619": "Lee et al., 2018, Neuron 97(1): 67--74.e4",
"FBrf0237676": "Ahn et al., 2017, eLife 6: e30115",
"FBrf0238151": "Steck et al., 2018, eLife 7: e31625",
"FBrf0240321": "Sánchez-Alcañiz et al., 2018, Nat. Commun. 9(1): 4252",
"FBrf0240352": "Sun et al., 2018, eLife 7: e39249",
"FBrf0241429": "Chai et al., 2019, Nat. Commun. 10(1): 643",
"FBrf0242503": "Lei et al., 2019, Front. Physiol. 10: 556",
"FBrf0246007": "Alpert et al., 2020, Curr. Biol. 30(12): 2275--2288.e5",
"FBrf0247159": "Weaver et al., 2020, G3 (Bethesda) 10(11): 4147--4158",
"FBrf0251811": "Dhakal et al., 2021, Commun. Biol. 4(1): 1281",
"FBrf0253093": "Trisal et al., 2022, J. Neurosci. 42(14): 2930--2941",
"FBrf0253272": "Task et al., 2022, eLife 11: e72599",
"FBrf0255204": "Omelchenko et al., 2022, Front. Mol. Neurosci. 15: 1023492",
"FBrf0256676": "Shrestha et al., 2023, EMBO Rep. 24(6): e56319",
"unattributed": null
},
"rex_gene": {
"FBgn0031634": "Ir25a"
},
"common_terms": "anterior cold cell, ACc, bitter sensing GRN,",
"major_stages": {
"FBdv00005336": "larval stage",
"FBdv00005369": "adult stage"
},
"major_tissues": {
"FBbt00049613": "bitter-sensing neuron",
"FBbt00005923": "hygrosensory neuron",
"FBbt00047485": "calcium-sensing neuron of labellar S-type taste bristle",
"FBbt00048209": "bitter-sensing neuron of the leg",
"FBbt00049720": "non-aristal sensory neuron VP3",
"FBbt00051293": "adult thermosensory neuron",
"FBbt00110990": "adult hygrosensory neuron Ir40a"
},
"transposons": {
"FBtp0057158": "P{Ir25a-GAL4.A}"
},
"expression_desc_text": "Drives expression in a subset of bitter-sensing, hygrosensory, and cold-sensing thermosensory neurons in the labellum, legs, arista, sacculus, antenna, labrum, and larval head sensory organs",
"stocks": {
"FBst0041728": "41728"
}
}
}
]
}').
json1:- process_json('/opt/logicmoo_opencog/hyperon-wam/data/ftp.flybase.org/releases/FB2023_04/precomputed_files/genes/ncRNA_genes_fb_2023_04.json').
% 51,290,751 inferences, 8.285 CPU in 8.289 seconds (100% CPU, 6190948 Lips)
json2:- process_json('/opt/logicmoo_opencog/hyperon-wam/data/ftp.flybase.org/releases/FB2023_04/precomputed_files/insertions/fu_gal4_table_fb_2023_04.json').
% 27,108,104 inferences, 4.454 CPU in 4.456 seconds (100% CPU, 6085908 Lips)