:- encoding(iso_latin_1). :- flush_output. :- setenv('RUST_BACKTRACE',full). :- multifile(fb_pred/2). :- discontiguous(fb_pred/2). :- dynamic(fb_pred/2). fb_stats:- metta_stats,!. '&flybase':for_metta('&flybase',P):- fb_pred_nr(F,A),current_predicate(F/A),length(L,A),P=[F|L],apply(F,L). % ============== % OBO LOADER % ============== :- set_option_value(encoding,utf8). %:- ensure_loaded('./obo_loader'). %:- ensure_loaded(json_loader). :- ensure_loaded(library(metta_interp)). % ============== % VSPACE LOADER % ============== %:- set_option_value(max_per_file,10_000_000). %:- set_option_value(max_per_file,1_000). %:- set_option_value(max_per_file,300). %:- set_option_value(max_per_file,inf+1). :- set_option_value(max_per_file,0). %:- set_option_value(max_per_file,20_000). %:- set_option_value(max_per_file,20_000_000_000_000_000_000_000_000_000_000_000). % load_flybase('./precomputed_files/insertions/fu_gal4_table_fb_*.json'). :- set_option_value(max_disk_cache,1000). :- set_option_value(samples_per_million,30). :- set_option_value(full_canon,true). flybase_identifier('FBab', 'Aberration'). flybase_identifier('FBal', 'Allele'). flybase_identifier('FBba', 'Balancer'). flybase_identifier('FBbt', 'AnatomyTerm'). flybase_identifier('FBch', 'ChromosomeArm'). flybase_identifier('FBcl', 'Clone'). flybase_identifier('FBcv', 'ControlledVocabulary'). flybase_identifier('FBdv', 'DevelopmentalStageTerm'). flybase_identifier('FBgg', 'GeneGroup'). flybase_identifier('FBgn', 'Gene'). flybase_identifier('FBhh', 'HumanDisease'). flybase_identifier('FBig', 'GeneInteraction'). flybase_identifier('FBim', 'Image'). flybase_identifier('FBlc', 'LargeDatasetMetadata'). flybase_identifier('FBmc', 'MolecularConstruct'). flybase_identifier('FBms', 'MolecularSegment'). flybase_identifier('FBpl', 'Probe'). flybase_identifier('FBpp', 'Polypeptide'). flybase_identifier('FBrf', 'Reference'). flybase_identifier('FBsf', 'SequenceFeature'). flybase_identifier('FBsn', 'GeneStrain'). flybase_identifier('FBst', 'GeneStock'). flybase_identifier('FBtc', 'CellLine'). flybase_identifier('FBti', 'TransposableIlementInsertion'). flybase_identifier('FBto', 'ExperimentalTool'). flybase_identifier('FBte', 'TransgenicElement'). flybase_identifier('FBtp', 'Transposon'). %flybase_identifier('FBtp', 'transgenic construct or natural transposon'). flybase_identifier('FBtr', 'Transcript'). % FlyBase prefixes symbol_prefix(Prefix, flybase, Desc):- flybase_identifier(Prefix, Desc). % Some common OBO prefixes (Note: these are more generalized and not specific to FlyBase) symbol_prefix('GO', obo, 'Gene Ontology'). symbol_prefix('PO', obo, 'Plant Ontology'). symbol_prefix('DOID', obo, 'Disease Ontology'). symbol_prefix('UBERON', obo, 'Uber-anatomy ontology'). symbol_prefix('CHEBI', obo, 'Chemical Entities of Biological Interest'). %:- abolish(gp_information/0). :- forall(retract(fb_pred(F,0)),abolish(F/0)). :- ensure_loaded(flybase_learn). :- prolog_load_context(directory, Here), atom_concat(Here, '/*_loader.pl', Mask), expand_file_name(Mask, Files), maplist([File]>>load_files(File), Files). %fbd(X,P):- fb_pred(F,A),functor(P,F,A),arg(_,P,X), no_repeats(P,call(P)). fbdead:- fb_pred_nr(F,A),functor(P,F,A),arg(_,P,xxxxxxxxxxxxxxxxx),no_repeats(P,call(P)), writeln(fbdead=P),fail. fbdead. column_description('allele_FBal#', "Current FlyBase identifier (FBal#) of allele.", identifier, 'Allele Identifier'). column_description('allele_symbol', "Current FlyBase allele symbol.", symbol, 'Allele Symbol'). column_description('Bin_value', "The expression bin classification of this gene in this RNA-Seq experiment, based on RPKM value.", numeric, 'Expression Bin'). column_description('Cluster_Cell_Type_ID', "The FlyBase FBbt ID for the cell type represented by the cell cluster.", identifier, 'Cell Type'). column_description('Cluster_Cell_Type_Name', "The FlyBase name for the cell type represented by the cell cluster.", name, 'Cell Type Name'). column_description('Cluster_ID', "The FlyBase FBlc ID for the dataset representing the cell cluster.", identifier, 'Cell Cluster'). column_description('Cluster_Name', "The FlyBase name for the dataset representing the cell cluster.", name, 'Cell Cluster Name'). column_description('Clustering_Analysis_ID', "The FlyBase FBlc ID for the dataset representing the clustering analysis.", identifier, 'Dataset'). column_description('Clustering_Analysis_Name', "The FlyBase name for the dataset representing the clustering analysis.", name, 'Dataset Name'). column_description('Count_used', "Indicates if the RPKM expression value was calculated using only the exonic regions unique to the gene and not overlapping exons of other genes (Unique), or, if the RPKM expression value was calculated based on all exons of the gene regardless of overlap with other genes (Total).", category, 'Count Type'). column_description('DATASAMPLE_NAME_(DATASET_ID)', "Each subsequent column reports the gene RPKM values for the sample listed in the header.", matrix, 'Expression Matrix'). column_description('FBgn', "The unique FlyBase gene ID for this gene.", identifier, 'Gene'). column_description('FBgn_id', "Unique FlyBase gene ID.", identifier, 'Gene'). column_description('FBrf#', "Current FlyBase identifer (FBrf#) of publication from which data came.", identifier, 'Publication Identifier'). column_description('FBrf', "Current FlyBase identifer (FBrf) of publication from which data came.", identifier, 'Publication Identifier'). column_description('FBrf_id', "FlyBase reference ID for the publication.", identifier, 'Reference'). column_description('Gene_ID', "The FlyBase FBgn ID for the expressed gene.", identifier, 'Gene'). column_description('Gene_Symbol', "The FlyBase symbol for the expressed gene.", symbol, 'Gene Symbol'). column_description('GeneSymbol', "The official FlyBase symbol for this gene.", symbol, 'Gene Symbol'). column_description('interaction', "Interaction information associated with allele.", text, 'Interaction Info'). column_description('Interaction_type', "Type of interaction observed, either 'suppressible' or 'enhanceable'.", category, 'Interaction Type'). column_description('Mean_Expression', "The average level of expression of the gene across all cells of the cluster.", numeric, 'Expression Level'). column_description('Parent_library_FBlc', "The unique FlyBase ID for the dataset project to which the RNA-Seq experiment belongs.", identifier, 'Dataset Project'). column_description('Parent_library_name', "The official FlyBase symbol for the dataset project to which the RNA-Seq experiment belongs.", name, 'Dataset Project Name'). column_description('phenotype_id', "Phenotypic identifier associated with the genotype.", identifier, 'Phenotype Identifier'). column_description('phenotype_name', "Phenotypic name associated with the genotype.", name, 'Phenotype Name'). column_description('PMID', "PubMed ID for the publication.", identifier, 'Publication'). column_description('Pub_ID', "The FlyBase FBrf ID for the reference in which the expression was reported.", identifier, 'Publication'). column_description('Pub_miniref', "The FlyBase citation for the publication in which the expression was reported.", citation, 'Publication Citation'). column_description('Publication_FBrf', "Current FlyBase identifier (FBrf) of publication from which the data came.", identifier, 'Publication Reference'). column_description('reference', "Current FlyBase identifer (FBrf#) of publication from which data came.", identifier, 'Publication Identifier'). column_description('Release_ID', "The D. melanogaster annotation set version from which the gene model used in the analysis derives.", version, 'Annotation Version'). column_description('RNASource_FBlc', "The unique FlyBase ID for the RNA-Seq experiment used for RPKM expression calculation.", identifier, 'RNA-Seq Experiment'). column_description('RNASource_name', "The official FlyBase symbol for the RNA-Seq experiment used for RPKM expression calculation.", name, 'RNA-Seq Experiment Name'). column_description('RPKM_value', "The RPKM expression value for the gene in the specified RNA-Seq experiment.", numeric, 'Expression Value'). column_description('Source_Tissue_Anatomy', "The ansymbolical region of the source tissue used for the experiment.", category, 'Tissue Anatomy'). column_description('Source_Tissue_Sex', "The sex of the source tissue used for the experiment.", category, 'Tissue Sex'). column_description('Source_Tissue_Stage', "The life stage of the source tissue used for the experiment.", category, 'Tissue Stage'). column_description('Spread', "The proportion of cells in the cluster in which the gene is detected.", proportion, 'Expression Spread'). column_description('Total_exon_base_count', "The number of bases in all exons of this gene.", numeric, 'Total Exonic Base Count'). column_description('UniProt_database', "Database in UniProt where the protein is listed (either UniProt/TrEMBL or UniProt/Swiss-Prot).", category, 'Protein Database'). column_description('UniProt_id', "Unique identifier for the protein in UniProt.", identifier, 'Protein'). column_description('Unique_exon_base_count', "The number of exonic bases unique to the gene (not overlapping exons of other genes).", numeric, 'Exonic Base Count'). column_description(allele_FBal, "Current FlyBase identifier (FBal) of allele.", identifier, 'Allele Identifier'). column_description(allele_symbol, "Current FlyBase allele symbol.", symbol, 'Allele Symbol'). column_description(current_fullname, "Current full name used in FlyBase for the object.", name, 'Name'). column_description(current_symbol, "Current symbol used in FlyBase for the object.", symbol, 'Symbol'). column_description(gene_fullname, "The official full name for this gene.", name, 'Gene Name'). column_description(gene_primary_id, "The unique FlyBase gene ID for this gene.", identifier, 'Gene'). column_description(gene_symbol, "The official FlyBase symbol for this gene.", symbol, 'Gene Symbol'). column_description(gene_type, "The type of gene.", category, 'Gene Type'). column_description(interaction, "Interaction information associated with allele.", text, 'Interaction Info'). column_description(listOf('genotype_FBids', ['/', ' ']), "Current FlyBase identifier(s) of the components that make up the genotype.", list, 'Genotype Identifiers'). column_description(listOf('genotype_symbols', ['/', ' ']), "Current FlyBase symbol(s) of the components that make up the genotype.", list, 'Genotype Symbols'). column_description(listOf('Interacting_gene_FBgn', ['|']), "Current FlyBase identifier (FBgn) of gene(s) involved in the interacting genotype.", list, 'Gene Identifier'). column_description(listOf('Interacting_gene_symbol', ['|']), "Current FlyBase symbol of gene(s) involved in the interacting genotype.", list, 'Gene Symbol'). column_description(listOf('qualifier_ids', ['|']), "Qualifier identifier(s) associated with phenotypic data for genotype.", list, 'Qualifier Identifiers'). column_description(listOf('qualifier_names', ['|']), "Qualifier name(s) associated with phenotypic data for genotype.", list, 'Qualifier Names'). column_description(listOf('Starting_gene_FBgn', ['|']), "Current FlyBase identifier (FBgn) of gene(s) involved in the starting genotype.", list, 'Gene Identifier'). column_description(listOf('Starting_gene_symbol', ['|']), "Current FlyBase symbol of gene(s) involved in the starting genotype.", list, 'Gene Symbol'). column_description(listOf(fullname_synonym, ['|']), "Non-current full name(s) associated with the object.", list, 'Name Synonyms'). column_description(listOf(genotype_FBids, [/, ' ']), "Current FlyBase identifier(s) of the components that make up the genotype.", list, 'Genotype Identifiers'). column_description(listOf(genotype_symbols, [/, ' ']), "Current FlyBase symbol(s) of the components that make up the genotype.", list, 'Genotype Symbols'). column_description(listOf(qualifier_ids, ['|']), "Qualifier identifier(s) associated with phenotypic data for genotype.", list, 'Qualifier Identifiers'). column_description(listOf(qualifier_names, ['|']), "Qualifier name(s) associated with phenotypic data for genotype.", list, 'Qualifier Names'). column_description(listOf(symbol_synonym, ['|']), "Non-current symbol(s) associated with the object.", list, 'Symbol Synonyms'). column_description(organism_abbreviation, "Abbreviation indicating the species of origin.", abbreviation, 'Organism'). column_description(phenotype_id, "Phenotypic identifier associated with the genotype.", identifier, 'Phenotype Identifier'). column_description(phenotype_name, "Phenotypic name associated with the genotype.", name, 'Phenotype Name'). column_description(primary_FBid, "Primary FlyBase identifier for the object.", identifier, 'Object'). column_description(reference, "Current FlyBase identifer (FBrf) of publication from which data came.", identifier, 'Publication Identifier'). column_names('allele_genetic_interactions', ['allele_symbol', 'allele_FBal#', 'interaction', 'FBrf#']). column_names('fb_synonym', ['primary_FBid', 'organism_abbreviation', 'current_symbol', 'current_fullname', listOf(fullname_synonym, ['|']), listOf(symbol_synonym, ['|'])]). column_names('gene_genetic_interactions', [listOf('Starting_gene_symbol', ['|']), listOf('Starting_gene_FBgn', ['|']), listOf('Interacting_gene_symbol', ['|']), listOf('Interacting_gene_FBgn', ['|']), 'Interaction_type', 'Publication_FBrf']). column_names('gene_rpkm_matrix', ['gene_primary_id', 'gene_symbol', 'gene_fullname', 'gene_type', 'DATASAMPLE_NAME_(DATASET_ID)']). column_names('gene_rpkm_report', ['Release_ID', 'FBgn#', 'GeneSymbol', 'Parent_library_FBlc#', 'Parent_library_name', 'RNASource_FBlc#', 'RNASource_name', 'RPKM_value', 'Bin_value', 'Unique_exon_base_count', 'Total_exon_base_count', 'Count_used']). column_names('genotype_phenotype_data', [listOf('genotype_symbols', ['/', ' ']), listOf('genotype_FBids', ['/', ' ']), 'phenotype_name', 'phenotype_id', listOf('qualifier_names', ['|']), listOf('qualifier_ids', ['|']), 'reference']). column_names('pmid_fbgn_uniprot', ['FBrf_id', 'PMID', 'FBgn_id', 'UniProt_database', 'UniProt_id']). column_names('scRNA-Seq_gene_expression', ['Pub_ID', 'Pub_miniref', 'Clustering_Analysis_ID', 'Clustering_Analysis_Name', 'Source_Tissue_Sex', 'Source_Tissue_Stage', 'Source_Tissue_Anatomy', 'Cluster_ID', 'Cluster_Name', 'Cluster_Cell_Type_ID', 'Cluster_Cell_Type_Name', 'Gene_ID', 'Gene_Symbol', 'Mean_Expression', 'Spread']). file_location('allele_genetic_interactions', "path_to_file/allele_genetic_interactions_*.tsv"). file_location('genotype_phenotype_data', "path_to_file/genotype_phenotype_data_*.tsv"). primary_column('allele_genetic_interactions', 'allele_FBal#'). primary_column('fb_synonym', 'primary_FBid'). primary_column('gene_genetic_interactions', 'Starting_gene_FBgn'). primary_column('gene_rpkm_matrix', 'gene_primary_id'). primary_column('gene_rpkm_report', 'FBgn#'). primary_column('genotype_phenotype_data', 'genotype_FBids'). primary_column('pmid_fbgn_uniprot', 'FBgn_id'). primary_column('scRNA-Seq_gene_expression', 'Gene_ID'). primary_column(allele_genetic_interactions, allele_FBal). primary_column(dataset_metadata, 'Item_ID'). primary_column(dmel_paralogs, 'Paralog_FBgn'). primary_column(fb_synonym, primary_FBid). primary_column(fbgn_exons2affy1_overlaps, 'FBgn'). primary_column(fbgn_exons2affy2_overlaps, 'FBgn'). primary_column(gene_genetic_interactions, 'Starting_gene_FBgn'). primary_column(gene_rpkm_matrix, gene_primary_id). primary_column(gene_rpkm_report, 'FBgn'). primary_column(genotype_phenotype_data, genotype_FBids). primary_column(pmid_fbgn_uniprot, 'FBgn_id'). too_generic(Var):- var(Var),!,fail. too_generic(pub_id). too_generic(X):- \+ symbolic_list_concat([_,_,_|_],'_',X). flybase_cols(allele_genetic_interactions,['##allele_symbol','allele_FBal#',interaction,'FBrf#']). flybase_cols(analysis,[ analysis_id,name,description,program,programversion,algorithm,sourcename,sourceversion,sourceuri,timeexecuted]). flybase_cols(analysisfeature,[ analysisfeature_id,feature_id,analysis_id,rawscore,normscore,significance,identity]). flybase_cols(analysisgrp,[ analysisgrp_id,rawscore,normscore,significance,identity,analysis_id,grp_id]). flybase_cols(analysisgrpmember,[ analysisgrpmember_id,rawscore,normscore,significance,identity,analysis_id,grpmember_id]). flybase_cols(analysisprop,[ analysisprop_id,analysis_id,type_id,value]). flybase_cols(audit_chado,[ audit_transaction,transaction_timestamp,userid,audited_table,record_pkey,record_ukey_cols,record_ukey_vals,audited_cols,audited_vals]). flybase_cols(cell_line,[ cell_line_id,name,uniquename,organism_id,timeaccessioned,timelastmodified]). flybase_cols(cell_line_loaderm,[ cell_line_loaderm_id,cell_line_id,loaderm_id,pub_id,rank]). flybase_cols(cell_line_loadermprop,[ cell_line_loadermprop_id,cell_line_loaderm_id,type_id,value,rank]). flybase_cols(cell_line_dbxref,[ cell_line_dbxref_id,cell_line_id,dbxref_id,is_current]). flybase_cols(cell_line_feature,[ cell_line_feature_id,cell_line_id,feature_id,pub_id]). flybase_cols(cell_line_library,[ cell_line_library_id,cell_line_id,library_id,pub_id]). flybase_cols(cell_line_libraryprop,[ cell_line_libraryprop_id,cell_line_library_id,type_id,value,rank]). flybase_cols(cell_line_relationship,[ cell_line_relationship_id,subject_id,object_id,type_id]). flybase_cols(cell_line_strain,[ cell_line_strain_id,strain_id,cell_line_id,pub_id]). flybase_cols(cell_line_strainprop,[ cell_line_strainprop_id,cell_line_strain_id,type_id,value,rank]). flybase_cols(cell_line_synonym,[ cell_line_synonym_id,cell_line_id,synonym_id,pub_id,is_current,is_internal]). flybase_cols(cell_lineprop,[ cell_lineprop_id,cell_line_id,type_id,value,rank]). flybase_cols(cell_lineprop_pub,[ cell_lineprop_pub_id,cell_lineprop_id,pub_id]). flybase_cols(cell_line_pub,[ cell_line_pub_id,cell_line_id,pub_id]). flybase_cols(contact,[ contact_id,description,name]). flybase_cols(cv,[ cv_id,name,definition]). flybase_cols(loaderm,[ loaderm_id,cv_id,definition,dbxref_id,is_obsolete,is_relationshiptype,name]). flybase_cols(loaderm_dbxref,[ loaderm_dbxref_id,loaderm_id,dbxref_id,is_for_definition]). flybase_cols(loaderm_relationship,[ loaderm_relationship_id,type_id,subject_id,object_id]). flybase_cols(loadermpath,[ loadermpath_id,type_id,subject_id,object_id,cv_id,pathdistance]). flybase_cols(loadermprop,[ loadermprop_id,loaderm_id,type_id,value,rank]). flybase_cols(loadermsynonym,[ loadermsynonym_id,loaderm_id,name,type_id]). flybase_cols(db,[ db_id,name,contact_id,description,urlprefix,url]). flybase_cols(dbxref,[ dbxref_id,db_id,accession,version,description,url]). flybase_cols(dbxrefprop,[ dbxrefprop_id,dbxref_id,type_id,value,rank]). flybase_cols(eimage,[ eimage_id,eimage_data,eimage_type,image_uri]). flybase_cols(environment,[ environment_id,uniquename,description]). flybase_cols(environment_loaderm,[ environment_loaderm_id,environment_id,loaderm_id]). flybase_cols(expression,[ expression_id,uniquename,md5checksum,description]). flybase_cols(expression_loaderm,[ expression_loaderm_id,expression_id,loaderm_id,rank,loaderm_type_id]). flybase_cols(expression_loadermprop,[ expression_loadermprop_id,expression_loaderm_id,type_id,value,rank]). flybase_cols(expression_image,[ expression_image_id,expression_id,eimage_id]). flybase_cols(expressionprop,[ expressionprop_id,expression_id,type_id,value,rank]). flybase_cols(expression_pub,[ expression_pub_id,expression_id,pub_id]). flybase_cols(feature,[ feature_id,dbxref_id,organism_id,name,uniquename,residues,seqlen,md5checksum,type_id,is_analysis,timeaccessioned,timelastmodified,is_obsolete]). flybase_cols(feature_loaderm,[ feature_loaderm_id,feature_id,loaderm_id,pub_id,is_not]). flybase_cols(feature_loaderm_dbxref,[ feature_loaderm_dbxref_id,feature_loaderm_id,dbxref_id]). flybase_cols(feature_loadermprop,[ feature_loadermprop_id,feature_loaderm_id,type_id,value,rank]). flybase_cols(feature_dbxref,[ feature_dbxref_id,feature_id,dbxref_id,is_current]). flybase_cols(feature_expression,[ feature_expression_id,expression_id,feature_id,pub_id]). flybase_cols(feature_expressionprop,[ feature_expressionprop_id,feature_expression_id,type_id,value,rank]). flybase_cols(feature_genotype,[ feature_genotype_id,feature_id,genotype_id,chromosome_id,rank,cgroup,loaderm_id]). flybase_cols(feature_grpmember,[ feature_grpmember_id,grpmember_id,feature_id]). flybase_cols(feature_grpmember_pub,[ feature_grpmember_pub_id,pub_id,feature_grpmember_id]). flybase_cols(feature_humanhealth_dbxref,[ feature_humanhealth_dbxref_id,humanhealth_dbxref_id,feature_id,pub_id]). flybase_cols(feature_interaction,[ feature_interaction_id,feature_id,interaction_id,role_id,rank]). flybase_cols(feature_interactionprop,[ feature_interactionprop_id,feature_interaction_id,type_id,value,rank]). flybase_cols(feature_interaction_pub,[ feature_interaction_pub_id,feature_interaction_id,pub_id]). flybase_cols(feature_phenotype,[ feature_phenotype_id,feature_id,phenotype_id]). flybase_cols(feature_pubprop,[ feature_pubprop_id,feature_pub_id,type_id,value,rank]). flybase_cols(feature_relationship,[ feature_relationship_id,subject_id,object_id,type_id,rank,value]). flybase_cols(feature_relationshipprop,[ feature_relationshipprop_id,feature_relationship_id,type_id,value,rank]). flybase_cols(feature_relationshipprop_pub,[ feature_relationshipprop_pub_id,feature_relationshipprop_id,pub_id]). flybase_cols(feature_relationship_pub,[ feature_relationship_pub_id,feature_relationship_id,pub_id]). flybase_cols(feature_synonym,[ feature_synonym_id,synonym_id,feature_id,pub_id,is_current,is_internal]). flybase_cols(featureloc,[ featureloc_id,feature_id,srcfeature_id,fmin,is_fmin_partial,fmax,is_fmax_partial,strand,phase,residue_info,locgroup,rank]). flybase_cols(featureloc_pub,[ featureloc_pub_id,featureloc_id,pub_id]). flybase_cols(featuremap,[ featuremap_id,name,description,unittype_id]). flybase_cols(featuremap_pub,[ featuremap_pub_id,featuremap_id,pub_id]). flybase_cols(featurepos,[ featurepos_id,featuremap_id,feature_id,map_feature_id,mappos]). flybase_cols(featureprop,[ featureprop_id,feature_id,type_id,value,rank]). flybase_cols(featureprop_pub,[ featureprop_pub_id,featureprop_id,pub_id]). flybase_cols(feature_pub,[ feature_pub_id,feature_id,pub_id]). flybase_cols(featurerange,[ featurerange_id,featuremap_id,feature_id,leftstartf_id,leftendf_id,rightstartf_id,rightendf_id,rangestr]). flybase_cols(genotype,[ genotype_id,uniquename,description,name,is_obsolete]). flybase_cols(genotype_loaderm,[ genotype_loaderm_id,genotype_id,loaderm_id,pub_id,is_not,rank]). flybase_cols(genotype_loadermprop,[ genotype_loadermprop_id,genotype_loaderm_id,type_id,value,rank]). flybase_cols(genotype_dbxref,[ genotype_dbxref_id,genotype_id,dbxref_id,is_current]). flybase_cols(genotype_synonym,[ genotype_synonym_id,genotype_id,synonym_id,pub_id,is_current,is_internal]). flybase_cols(genotypeprop,[ genotypeprop_id,genotype_id,type_id,value,rank,cvalue_id]). flybase_cols(genotypeprop_pub,[ genotypeprop_pub_id,genotypeprop_id,pub_id]). flybase_cols(genotype_pub,[ genotype_pub_id,genotype_id,pub_id]). flybase_cols(grp,[ grp_id,name,uniquename,type_id,is_analysis,is_obsolete]). flybase_cols(grp_loaderm,[ grp_loaderm_id,is_not,loaderm_id,grp_id,pub_id]). flybase_cols(grp_dbxref,[ grp_dbxref_id,is_current,dbxref_id,grp_id]). flybase_cols(grp_pubprop,[ grp_pubprop_id,value,rank,type_id,grp_pub_id]). flybase_cols(grp_relationship,[ grp_relationship_id,value,rank,type_id,subject_id,object_id]). flybase_cols(grp_relationshipprop,[ grp_relationshipprop_id,value,rank,type_id,grp_relationship_id]). flybase_cols(grp_relationship_pub,[ grp_relationship_pub_id,pub_id,grp_relationship_id]). flybase_cols(grp_synonym,[ grp_synonym_id,synonym_id,grp_id,pub_id,is_current,is_internal]). flybase_cols(grpmember,[ grpmember_id,rank,type_id,grp_id]). flybase_cols(grpmember_loaderm,[ grpmember_loaderm_id,is_not,loaderm_id,grpmember_id,pub_id]). flybase_cols(grpmemberprop,[ grpmemberprop_id,value,rank,type_id,grpmember_id]). flybase_cols(grpmemberprop_pub,[ grpmemberprop_pub_id,pub_id,grpmemberprop_id]). flybase_cols(grpmember_pub,[ grpmember_pub_id,pub_id,grpmember_id]). flybase_cols(grpprop,[ grpprop_id,value,rank,type_id,grp_id]). flybase_cols(grpprop_pub,[ grpprop_pub_id,pub_id,grpprop_id]). flybase_cols(grp_pub,[ grp_pub_id,pub_id,grp_id]). flybase_cols(humanhealth,[ humanhealth_id,name,uniquename,organism_id,dbxref_id,is_obsolete]). flybase_cols(humanhealth_loaderm,[ humanhealth_loaderm_id,humanhealth_id,loaderm_id,pub_id]). flybase_cols(humanhealth_loadermprop,[ humanhealth_loadermprop_id,humanhealth_loaderm_id,type_id,value,rank]). flybase_cols(humanhealth_dbxref,[ humanhealth_dbxref_id,humanhealth_id,dbxref_id,is_current]). flybase_cols(humanhealth_dbxrefprop,[ humanhealth_dbxrefprop_id,humanhealth_dbxref_id,type_id,value,rank]). flybase_cols(humanhealth_dbxrefprop_pub,[ humanhealth_dbxrefprop_pub_id,humanhealth_dbxrefprop_id,pub_id]). flybase_cols(humanhealth_feature,[ humanhealth_feature_id,humanhealth_id,feature_id,pub_id]). flybase_cols(humanhealth_featureprop,[ humanhealth_featureprop_id,humanhealth_feature_id,type_id,value,rank]). flybase_cols(humanhealth_phenotype,[ humanhealth_phenotype_id,humanhealth_id,phenotype_id,pub_id]). flybase_cols(humanhealth_phenotypeprop,[ humanhealth_phenotypeprop_id,humanhealth_phenotype_id,type_id,value,rank]). flybase_cols(humanhealth_pubprop,[ humanhealth_pubprop_id,value,rank,type_id,humanhealth_pub_id]). flybase_cols(humanhealth_relationship,[ humanhealth_relationship_id,subject_id,object_id,type_id,value,rank]). flybase_cols(humanhealth_relationship_pub,[ humanhealth_relationship_pub_id,humanhealth_relationship_id,pub_id]). flybase_cols(humanhealth_synonym,[ humanhealth_synonym_id,humanhealth_id,synonym_id,pub_id,is_current,is_internal]). flybase_cols(humanhealthprop,[ humanhealthprop_id,humanhealth_id,type_id,value,rank]). flybase_cols(humanhealthprop_pub,[ humanhealthprop_pub_id,humanhealthprop_id,pub_id]). flybase_cols(humanhealth_pub,[ humanhealth_pub_id,humanhealth_id,pub_id]). flybase_cols(interaction,[ interaction_id,uniquename,type_id,description,is_obsolete]). flybase_cols(interaction_cell_line,[ interaction_cell_line_id,cell_line_id,interaction_id,pub_id]). flybase_cols(interaction_loaderm,[ interaction_loaderm_id,interaction_id,loaderm_id]). flybase_cols(interaction_loadermprop,[ interaction_loadermprop_id,interaction_loaderm_id,type_id,value,rank]). flybase_cols(interaction_expression,[ interaction_expression_id,expression_id,interaction_id,pub_id]). flybase_cols(interaction_expressionprop,[ interaction_expressionprop_id,interaction_expression_id,type_id,value,rank]). flybase_cols(interaction_group,[ interaction_group_id,uniquename,is_obsolete,description]). flybase_cols(interaction_group_feature_interaction,[ interaction_group_feature_interaction_id,interaction_group_id,feature_interaction_id,rank,ftype]). flybase_cols(interactionprop,[ interactionprop_id,interaction_id,type_id,value,rank]). flybase_cols(interactionprop_pub,[ interactionprop_pub_id,interactionprop_id,pub_id]). flybase_cols(interaction_pub,[ interaction_pub_id,interaction_id,pub_id]). flybase_cols(library,[ library_id,organism_id,name,uniquename,type_id,is_obsolete,timeaccessioned,timelastmodified]). flybase_cols(library_loaderm,[ library_loaderm_id,library_id,loaderm_id,pub_id]). flybase_cols(library_loadermprop,[ library_loadermprop_id,library_loaderm_id,type_id,value,rank]). flybase_cols(library_dbxref,[ library_dbxref_id,library_id,dbxref_id,is_current]). flybase_cols(library_dbxrefprop,[ library_dbxrefprop_id,library_dbxref_id,type_id,value,rank]). flybase_cols(library_expression,[ library_expression_id,expression_id,library_id,pub_id]). flybase_cols(library_expressionprop,[ library_expressionprop_id,library_expression_id,type_id,value,rank]). flybase_cols(library_feature,[ library_feature_id,library_id,feature_id]). flybase_cols(library_featureprop,[ library_featureprop_id,library_feature_id,type_id,value,rank]). flybase_cols(library_grpmember,[ library_grpmember_id,grpmember_id,library_id]). flybase_cols(library_humanhealth,[ library_humanhealth_id,humanhealth_id,library_id,pub_id]). flybase_cols(library_humanhealthprop,[ library_humanhealthprop_id,library_humanhealth_id,type_id,value,rank]). flybase_cols(library_interaction,[ library_interaction_id,interaction_id,library_id,pub_id]). flybase_cols(library_relationship,[ library_relationship_id,subject_id,object_id,type_id]). flybase_cols(library_relationship_pub,[ library_relationship_pub_id,library_relationship_id,pub_id]). flybase_cols(library_strain,[ library_strain_id,strain_id,library_id,pub_id]). flybase_cols(library_strainprop,[ library_strainprop_id,library_strain_id,type_id,value,rank]). flybase_cols(library_synonym,[ library_synonym_id,synonym_id,library_id,pub_id,is_current,is_internal]). flybase_cols(libraryprop,[ libraryprop_id,library_id,type_id,value,rank]). flybase_cols(libraryprop_pub,[ libraryprop_pub_id,libraryprop_id,pub_id]). flybase_cols(library_pub,[ library_pub_id,library_id,pub_id]). flybase_cols(lock,[ lock_id,username,locktype,lockname,lockrank,lockstatus,timeaccessioend,timelastmodified,chadoxmlfile,comment,task]). flybase_cols(organism,[ organism_id,abbreviation,genus,species,common_name,comment]). flybase_cols(organism_loaderm,[ organism_loaderm_id,organism_id,loaderm_id,rank,pub_id]). flybase_cols(organism_loadermprop,[ organism_loadermprop_id,organism_loaderm_id,type_id,value,rank]). flybase_cols(organism_dbxref,[ organism_dbxref_id,organism_id,dbxref_id,is_current]). flybase_cols(organism_grpmember,[ organism_grpmember_id,grpmember_id,organism_id]). flybase_cols(organism_library,[ organism_library_id,organism_id,library_id]). flybase_cols(organismprop,[ organismprop_id,organism_id,type_id,value,rank]). flybase_cols(organismprop_pub,[ organismprop_pub_id,organismprop_id,pub_id]). flybase_cols(organism_pub,[ organism_pub_id,organism_id,pub_id]). flybase_cols(phendesc,[ phendesc_id,genotype_id,environment_id,description,type_id,pub_id]). flybase_cols(phenotype,[ phenotype_id,uniquename,observable_id,attr_id,value,cvalue_id,assay_id]). flybase_cols(phenotype_comparison,[ phenotype_comparison_id,genotype1_id,environment1_id,genotype2_id,environment2_id,phenotype1_id,phenotype2_id,pub_id,organism_id]). flybase_cols(phenotype_comparison_loaderm,[ phenotype_comparison_loaderm_id,phenotype_comparison_id,loaderm_id,rank]). flybase_cols(phenotype_loaderm,[ phenotype_loaderm_id,phenotype_id,loaderm_id,rank]). flybase_cols(phenstatement,[ phenstatement_id,genotype_id,environment_id,phenotype_id,type_id,pub_id]). flybase_cols(project,[ project_id,name,description]). flybase_cols(pub,[ pub_id,title,volumetitle,volume,series_name,issue,pyear,pages,miniref,type_id,is_obsolete,publisher,pubplace,uniquename]). flybase_cols(pub_dbxref,[ pub_dbxref_id,pub_id,dbxref_id,is_current]). flybase_cols(pub_relationship,[ pub_relationship_id,type_id,subject_id,object_id]). flybase_cols(pubauthor,[ pubauthor_id,pub_id,rank,editor,surname,givennames,suffix]). flybase_cols(pubprop,[ pubprop_id,pub_id,type_id,value,rank]). flybase_cols(stock,[ stock_id,dbxref_id,organism_id,name,uniquename,description,type_id,is_obsolete]). flybase_cols(stock_loaderm,[ stock_loaderm_id,stock_id,loaderm_id,pub_id]). flybase_cols(stock_dbxref,[ stock_dbxref_id,stock_id,dbxref_id,is_current]). flybase_cols(stock_genotype,[ stock_genotype_id,stock_id,genotype_id]). flybase_cols(stock_relationship,[ stock_relationship_id,subject_id,object_id,type_id,value,rank]). flybase_cols(stock_relationship_pub,[ stock_relationship_pub_id,stock_relationship_id,pub_id]). flybase_cols(stockcollection,[ stockcollection_id,type_id,contact_id,name,uniquename]). flybase_cols(stockcollection_stock,[ stockcollection_stock_id,stockcollection_id,stock_id]). flybase_cols(stockcollectionprop,[ stockcollectionprop_id,stockcollection_id,type_id,value,rank]). flybase_cols(stockprop,[ stockprop_id,stock_id,type_id,value,rank]). flybase_cols(stockprop_pub,[ stockprop_pub_id,stockprop_id,pub_id]). flybase_cols(stock_pub,[ stock_pub_id,stock_id,pub_id]). flybase_cols(strain,[ strain_id,name,uniquename,organism_id,dbxref_id,is_obsolete]). flybase_cols(strain_loaderm,[ strain_loaderm_id,strain_id,loaderm_id,pub_id]). flybase_cols(strain_loadermprop,[ strain_loadermprop_id,strain_loaderm_id,type_id,value,rank]). flybase_cols(strain_dbxref,[ strain_dbxref_id,strain_id,dbxref_id,is_current]). flybase_cols(strain_feature,[ strain_feature_id,strain_id,feature_id,pub_id]). flybase_cols(strain_featureprop,[ strain_featureprop_id,strain_feature_id,type_id,value,rank]). flybase_cols(strain_phenotype,[ strain_phenotype_id,strain_id,phenotype_id,pub_id]). flybase_cols(strain_phenotypeprop,[ strain_phenotypeprop_id,strain_phenotype_id,type_id,value,rank]). flybase_cols(strain_relationship,[ strain_relationship_id,subject_id,object_id,type_id,value,rank]). flybase_cols(strain_relationship_pub,[ strain_relationship_pub_id,strain_relationship_id,pub_id]). flybase_cols(strain_synonym,[ strain_synonym_id,strain_id,synonym_id,pub_id,is_current,is_internal]). flybase_cols(strainprop,[ strainprop_id,strain_id,type_id,value,rank]). flybase_cols(strainprop_pub,[ strainprop_pub_id,strainprop_id,pub_id]). flybase_cols(strain_pub,[ strain_pub_id,strain_id,pub_id]). flybase_cols(synonym,[ synonym_id,name,type_id,synonym_sgml]). flybase_cols(tableinfo,[ tableinfo_id,name,primary_key_column,is_view,view_on_table_id,superclass_table_id,is_updateable,modification_date]). flybase_cols(update_track,[ update_track_id,release,fbid,time_update,author,statement,comment,annotation_id]). table_columns(T,List):- table_columns_tt(TT,List), eigther_contains(T,TT),!. table_columns_tt(TT,List):- column_names(TT,List). table_columns_tt(TT,List):- flybase_cols(TT,List). table_columns_tt(TT,List):- t_h_n(TT,_,List). eigther_contains(TT,T):- TT=T,!. eigther_contains(T,TT):- symbol_contains(T,TT),!. eigther_contains(TT,T):- symbol_contains(T,TT),!. column_names('cyto-genetic-seq', ['Cytogenetic_map_position', 'Genetic_map_position', 'Sequence_coordinates_(release_6)', 'R6_conversion_notes']). column_names('Dmel_enzyme', [gene_group_id, gene_group_name, listOf(gene_group_GO_id), listOf(gene_group_GO_name), listOf(gene_group_EC_number), listOf(gene_group_EC_name), gene_id, gene_symbol, gene_name, listOf(gene_EC_number), listOf(gene_EC_name)]). column_names('scRNA-Seq_gene_expression', ['Pub_ID', 'Pub_miniref', 'Clustering_Analysis_ID', 'Clustering_Analysis_Name', 'Source_Tissue_Sex', 'Source_Tissue_Stage', 'Source_Tissue_Anatomy', 'Cluster_ID', 'Cluster_Name', 'Cluster_Cell_Type_ID', 'Cluster_Cell_Type_Name', 'Gene_ID', 'Gene_Symbol', 'Mean_Expression', 'Spread']). column_names(allele_genetic_interactions, [allele_symbol, allele_FBal, interaction, 'FBrf']). column_names(allele_phenotypic, [allele_symbol, allele_FBal, phenotype, 'FBrf']). column_names(fbal_to_fbgn, ['AlleleID', 'AlleleSymbol', 'GeneID', 'GeneSymbol']). column_names(genotype_phenotype_data, [listOf(genotype_symbols, [/, ' ']), listOf(genotype_FBids, [/, ' ']), phenotype_name, phenotype_id, listOf(qualifier_names, ['|']), listOf(qualifier_ids, ['|']), reference]). % #genotype_symbols genotype_FBids phenotype_name phenotype_id qualifier_names qualifier_ids reference column_names(automated_gene_summaries, [primary_FBgn, summary_text]). column_names(best_gene_summary, ['FBgn', 'Gene_Symbol', 'Summary_Source', 'Summary']). column_names(cDNA_clone_data, ['FBcl', organism_abbreviation, clone_name, dataset_metadata_name, listOf(cDNA_accession), listOf('EST_accession')]). column_names(dataset_metadata, ['Dataset_Metadata_ID', 'Dataset_Metadata_Name', 'Item_ID', 'Item_Name']). column_names(disease_model_annotations, ['FBgn', 'Gene_symbol', 'HGNC', 'DO_qualifier', 'DO', 'DO_term', 'Allele_used_in_model_(FBal)', 'Allele_used_in_model_(symbol)', 'Based_on_orthology_with_(HGNC_ID)', 'Based_on_orthology_with_(symbol)', 'Evidence/interacting_alleles', 'Reference_(FBrf)']). column_names(dmel_gene_sequence_ontology_annotations, [gene_primary_id, gene_symbol, so_term_name, so_term_id]). column_names(dmel_human_orthologs_disease, ['Dmel_gene', 'Dmel_gene_symbol', 'Human_gene_HGNC', 'Human_gene_OMIM', 'Human_gene_symbol', 'DIOPT_score', 'OMIM_Phenotype_IDs', 'OMIM_Phenotype_IDs[name]']). column_names(dmel_paralogs, ['FBgn', 'GeneSymbol', 'Arm/Scaffold', 'Location', 'Strand', 'Paralog_FBgn', 'Paralog_GeneSymbol', 'Paralog_Arm/Scaffold', 'Paralog_Location', 'Paralog_Strand', 'DIOPT_score']). column_names(dmel_unique_protein_isoforms, ['FBgn', 'FB_gene_symbol', representative_protein, listOf(identical_protein)]). column_names(entity_publication, [entity_id, entity_name, 'FlyBase_publication', 'PubMed']). column_names(fb_synonym, [primary_FBid, organism_abbreviation, current_symbol, current_fullname, listOf(fullname_synonym, ['|']), listOf(symbol_synonym, ['|'])]). column_names(fbgn_annotation_ID, [gene_symbol, organism_abbreviation, primary_FBgn, listOf(secondary_FBgn), annotation_ID, listOf(secondary_annotation_ID)]). column_names(fbgn_exons2affy1_overlaps, ['FBgn', listOf(affy)]). column_names(fbgn_exons2affy2_overlaps, ['FBgn', listOf(affy)]). column_names(fbgn_fbtr_fbpp, ['FBgn', 'FBtr', 'FBpp']). column_names(fbgn_fbtr_fbpp_expanded, [organism, gene_type, gene_ID, gene_symbol, gene_fullname, annotation_ID, transcript_type, transcript_ID, transcript_symbol, polypeptide_ID, polypeptide_symbol]). column_names(fbgn_gleanr, [organism_abbreviation, gene_symbol, primary_FBgn, 'GLEANR']). column_names(fbgn_NAseq_Uniprot, [gene_symbol, organism_abbreviation, primary_FBgn, nucleotide_accession, na_based_protein_accession, 'UniprotKB/Swiss-Prot/TrEMBL_accession', 'EntrezGene', 'RefSeq_transcripts', 'RefSeq_proteins']). column_names(fbgn_uniprot, [primary_FBgn, gene_symbol, 'CG', 'UniprotKB/Swiss-Prot/TrEMBL_accession']). column_names(fbrf_pmid_pmcid_doi, ['FBrf', 'PMID', 'PMCID', 'DOI', pub_type, miniref, pmid_added]). column_names(gene_functional_complementation, ['Dmel_gene_symbol', 'Dmel_gene_FBgn', ortholog_gene_symbol, ortholog_gene_FBgn_ID, reference_FBrf]). column_names(gene_genetic_interactions, [listOf('Starting_gene_symbol'), listOf('Starting_gene_FBgn'), listOf('Interacting_gene_symbol'), listOf('Interacting_gene_FBgn'), 'Interaction_type', 'Publication_FBrf']). column_names(gene_group, ['FB_group', 'FB_group_symbol', 'FB_group_name', 'Parent_FB_group', 'Parent_FB_group_symbol', 'Group_member_FB_gene', 'Group_member_FB_gene_symbol']). column_names(gene_groups_HGNC, ['FB_group', 'FB_group_symbol', 'FB_group_name', 'HGNC_family']). column_names(gene_map_table, [organism_abbreviation, current_symbol, primary_FBid, recombination_loc, cytogenetic_loc, sequence_loc]). column_names(gene_rpkm_matrix, [gene_primary_id, gene_symbol, gene_fullname, gene_type, 'DATASAMPLE_NAME_(DATASET_ID)']). column_names(gene_rpkm_report, ['Release_ID', 'FBgn', 'GeneSymbol', 'Parent_library_FBlc', 'Parent_library_name', 'RNASource_FBlc', 'RNASource_name', 'RPKM_value', 'Bin_value', 'Unique_exon_base_count', 'Total_exon_base_count', 'Count_used']). column_names(gene_snapshots, ['FBgn', 'GeneSymbol', 'GeneName', datestamp, gene_snapshot_text]). column_names(genomic_clone, ['FBcl', organism_abbreviation, clone_name, accession]). column_names(insertion_mapping, [insertion_symbol, 'FBti', genomic_location, range, orientation, estimated_cytogenetic_location, observed_cytogenetic_location]). column_names(organism_list, [genus, species, abbreviation, common_name, 'NCBI_taxon', 'drosophilid?']). column_names(pathway_group, ['FB_group', 'FB_group_symbol', 'FB_group_name', 'Parent_FB_group', 'Parent_FB_group_symbol', 'Group_member_FB_gene', 'Group_member_FB_gene_symbol']). column_names(physical_interactions_mitab, [listOf('ID_Interactor_A'), listOf('ID_Interactor_B'), listOf('Alt_ID_Interactor_A'), listOf('Alt_ID_Interactor_B'), listOf('Alias_Interactor_A'), listOf('Alias_Interactor_B'), listOf('Interaction_Detection_Method'), listOf('Publication_1st_Author'), listOf('Publication'), 'Taxid_Interactor_A', 'Taxid_Interactor_B', listOf('Interaction_Type'), listOf('Source_Database'), listOf('Interaction_Identifier'), listOf('Confidence_Value'), listOf('Expansion_Method'), listOf('Biological_Role_Interactor_A'), listOf('Biological_Role_Interactor_B'), listOf('Experimental_Role_Interactor_A'), listOf('Experimental_Role_Interactor_B'), listOf('Type_Interactor_A'), listOf('Type_Interactor_B'), listOf('Xref_Interactor_A'), listOf('Xref_Interactor_B'), listOf('Interaction_Xref'), listOf('Annotation_Interactor_A'), listOf('Annotation_Interactor_B'), listOf('Interaction_Annotation'), listOf('Host_Organism'), 'Interaction_Parameters', 'Creation_Date', 'Update_Date', 'Checksum_Interactor_A', 'Checksum_Interactor_B', 'Interaction_Checksum', 'Negative', listOf('Feature_Interactor_A'), listOf('Feature_Interactor_B'), 'Stoichiometry_Interactor_A', 'Stoichiometry_Interactor_B', listOf('Identification_Method_Participant_A'), listOf('Identification_Method_Participant_B')]). column_names(pmid_fbgn_uniprot, ['FBrf', 'PMID', 'FBgn', 'UniProt_database', 'UniProt_id']). column_names(synonym, [primary_FBid, organism_abbreviation, current_symbol, current_fullname, listOf(fullname_synonym), listOf(symbol_synonym)]). column_names_ext(pmid_fbgn_uniprot, ['FBrf_id', 'PMID', 'FBgn_id', 'UniProt_database', 'UniProt_id']). column_names_ext(gene_genetic_interactions, [listOf('Starting_gene_symbol', ['|']), listOf('Starting_gene_FBgn', ['|']), listOf('Interacting_gene_symbol', ['|']), listOf('Interacting_gene_FBgn', ['|']), 'Interaction_type', 'Publication_FBrf']). column_names_ext(gene_rpkm_matrix, [gene_primary_id, gene_symbol, gene_fullname, gene_type, 'BCM_1_E2-4hr_(FBlc0000061)', 'BCM_1_E14-16hr_(FBlc0000062)', 'BCM_1_E2-16hr_(FBlc0000063)', 'BCM_1_E2-16hr100_(FBlc0000064)', 'BCM_1_L3i_(FBlc0000065)', 'BCM_1_L3i100_(FBlc0000066)', 'BCM_1_P3d_(FBlc0000067)', 'BCM_1_FA3d_(FBlc0000068)', 'BCM_1_MA3d_(FBlc0000069)', 'BCM_1_P_(FBlc0000070)', 'BCM_1_L_(FBlc0000071)', 'BCM_1_A17d_(FBlc0000072)', 'mE_mRNA_em0-2hr_(FBlc0000086)', 'mE_mRNA_em2-4hr_(FBlc0000087)', 'mE_mRNA_em4-6hr_(FBlc0000088)', 'mE_mRNA_em6-8hr_(FBlc0000089)', 'mE_mRNA_em8-10hr_(FBlc0000090)', 'mE_mRNA_em10-12hr_(FBlc0000091)', 'mE_mRNA_em12-14hr_(FBlc0000092)', 'mE_mRNA_em14-16hr_(FBlc0000093)', 'mE_mRNA_em16-18hr_(FBlc0000094)', 'mE_mRNA_em18-20hr_(FBlc0000095)', 'mE_mRNA_em20-22hr_(FBlc0000096)', 'mE_mRNA_em22-24hr_(FBlc0000097)', 'mE_mRNA_L1_(FBlc0000098)', 'mE_mRNA_L2_(FBlc0000099)', 'mE_mRNA_L3_12hr_(FBlc0000100)', 'mE_mRNA_L3_PS1-2_(FBlc0000101)', 'mE_mRNA_L3_PS3-6_(FBlc0000102)', 'mE_mRNA_L3_PS7-9_(FBlc0000103)', 'mE_mRNA_WPP_(FBlc0000104)', 'mE_mRNA_P5_(FBlc0000105)', 'mE_mRNA_P6_(FBlc0000106)', 'mE_mRNA_P8_(FBlc0000107)', 'mE_mRNA_P9-10_(FBlc0000108)', 'mE_mRNA_P15_(FBlc0000109)', 'mE_mRNA_AdF_Ecl_1days_(FBlc0000110)', 'mE_mRNA_AdF_Ecl_5days_(FBlc0000111)', 'mE_mRNA_AdF_Ecl_30days_(FBlc0000112)', 'mE_mRNA_AdM_Ecl_1days_(FBlc0000113)', 'mE_mRNA_AdM_Ecl_5days_(FBlc0000114)', 'mE_mRNA_AdM_Ecl_30days_(FBlc0000115)', 'mE_mRNA_A_MateF_1d_head_(FBlc0000207)', 'mE_mRNA_A_MateF_4d_ovary_(FBlc0000208)', 'mE_mRNA_A_MateM_1d_head_(FBlc0000209)', 'mE_mRNA_A_VirF_1d_head_(FBlc0000210)', 'mE_mRNA_A_VirF_4d_head_(FBlc0000211)', 'mE_mRNA_A_MateF_20d_head_(FBlc0000212)', 'mE_mRNA_A_MateF_4d_head_(FBlc0000213)', 'mE_mRNA_A_MateM_20d_head_(FBlc0000214)', 'mE_mRNA_A_MateM_4d_acc_gland_(FBlc0000215)', 'mE_mRNA_A_MateM_4d_head_(FBlc0000216)', 'mE_mRNA_A_MateM_4d_testis_(FBlc0000217)', 'mE_mRNA_A_1d_carcass_(FBlc0000218)', 'mE_mRNA_A_1d_dig_sys_(FBlc0000219)', 'mE_mRNA_A_20d_carcass_(FBlc0000220)', 'mE_mRNA_A_20d_dig_sys_(FBlc0000221)', 'mE_mRNA_A_4d_carcass_(FBlc0000222)', 'mE_mRNA_A_4d_dig_sys_(FBlc0000223)', 'mE_mRNA_P8_CNS_(FBlc0000224)', 'mE_mRNA_L3_CNS_(FBlc0000225)', 'mE_mRNA_L3_Wand_carcass_(FBlc0000226)', 'mE_mRNA_L3_Wand_dig_sys_(FBlc0000227)', 'mE_mRNA_L3_Wand_fat_(FBlc0000228)', 'mE_mRNA_L3_Wand_imag_disc_(FBlc0000229)', 'mE_mRNA_L3_Wand_saliv_(FBlc0000230)', 'mE_mRNA_A_VirF_20d_head_(FBlc0000231)', 'mE_mRNA_A_VirF_4d_ovary_(FBlc0000232)', 'mE_mRNA_WPP_fat_(FBlc0000233)', 'mE_mRNA_WPP_saliv_(FBlc0000234)', 'mE_mRNA_P8_fat_(FBlc0000235)', 'mE_mRNA_A_4d_Cold1_(FBlc0000237)', 'mE_mRNA_A_4d_Cold2_(FBlc0000238)', 'mE_mRNA_L3_Cu_0.5mM_(FBlc0000239)', 'mE_mRNA_L3_late_Zn_5mM_(FBlc0000240)', 'mE_mRNA_A_4d_Cu_15mM_(FBlc0000241)', 'mE_mRNA_A_4d_Zn_4.5mM_(FBlc0000242)', 'mE_mRNA_A_4d_Caffeine_25mg/ml_(FBlc0000243)', 'mE_mRNA_A_4d_Caffeine_2.5mg/ml_(FBlc0000244)', 'mE_mRNA_L3_Caffeine_1.5mg/ml_(FBlc0000245)', 'mE_mRNA_A_4d_Cd_0.1M_(FBlc0000246)', 'mE_mRNA_A_4d_Cd_0.05M_(FBlc0000247)', 'mE_mRNA_L3_Cd_12h_(FBlc0000248)', 'mE_mRNA_L3_Cd_6hr_(FBlc0000249)', 'mE_mRNA_A_4d_Paraquat_5mM_(FBlc0000250)', 'mE_mRNA_A_4d_Paraquat_10mM_(FBlc0000251)', 'mE_mRNA_L3_Rotenone_8ug_(FBlc0000252)', 'mE_mRNA_L3_Rotenone_2ug_(FBlc0000253)', 'mE_mRNA_L3_EtOH_10_(FBlc0000254)', 'mE_mRNA_L3_EtOH_5_(FBlc0000255)', 'mE_mRNA_L3_EtOH_2.5_(FBlc0000256)', 'mE_mRNA_A_4d_Heatshock_(FBlc0000257)', 'mE_mRNA_A_10d_Resveratrol_100uM_(FBlc0000672)', 'mE_mRNA_A_10d_Rotenone_Starved_(FBlc0000673)', 'mE_mRNA_F_Sindbis_virus_(FBlc0000674)', 'mE_mRNA_L_Sindbis_virus_(FBlc0000675)', 'mE_mRNA_M_Sindbis_virus_(FBlc0000676)', 'mE_mRNA_P_Sindbis_virus_(FBlc0000677)', 'mE_mRNA_CME-W2_cells_(FBlc0000261)', 'mE_mRNA_GM2_cells_(FBlc0000262)', 'mE_mRNA_mbn2_cells_(FBlc0000263)', 'mE_mRNA_BG2-c2_cells_(FBlc0000264)', 'mE_mRNA_D20-c5_cells_(FBlc0000265)', 'mE_mRNA_S3_cells_(FBlc0000266)', 'mE_mRNA_1182-4H_cells_(FBlc0000267)', 'mE_mRNA_CME_L1_cells_(FBlc0000268)', 'mE_mRNA_Kc167_cells_(FBlc0000269)', 'mE_mRNA_BG1-c1_cells_(FBlc0000270)', 'mE_mRNA_D11_cells_(FBlc0000271)', 'mE_mRNA_D16-c3_cells_(FBlc0000272)', 'mE_mRNA_D17-c3_cells_(FBlc0000273)', 'mE_mRNA_D21_cells_(FBlc0000274)', 'mE_mRNA_D32_cells_(FBlc0000275)', 'mE_mRNA_D4-c1_cells_(FBlc0000276)', 'mE_mRNA_D8_cells_(FBlc0000277)', 'mE_mRNA_D9_cells_(FBlc0000278)', 'mE_mRNA_S1_cells_(FBlc0000279)', 'mE_mRNA_S2R+_cells_(FBlc0000280)', 'mE_mRNA_Sg4_cells_(FBlc0000281)', 'mE_mRNA_OSS_cells_(FBlc0000282)', 'mE_mRNA_OSC_cells_(FBlc0000283)', 'mE_mRNA_fGS_cells_(FBlc0000284)', 'Knoblich_mRNA_L3_CNS_neuroblast_(FBlc0000505)', 'Knoblich_mRNA_L3_CNS_neuron_(FBlc0000506)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Brain_(FBlc0003619)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Crop_(FBlc0003620)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Carcass_(FBlc0003621)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Eye_(FBlc0003622)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_FatBody_(FBlc0003623)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Head_(FBlc0003624)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Hindgut_(FBlc0003625)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Midgut_(FBlc0003626)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Ovary_(FBlc0003627)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_RectalPad_(FBlc0003628)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_SalivaryGland_(FBlc0003629)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_ThoracicoAbdominalGanglion_(FBlc0003630)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_MalpighianTubule_(FBlc0003631)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Mated_Spermathecum_(FBlc0003632)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Virgin_Spermathecum_(FBlc0003633)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Whole_(FBlc0003634)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Brain_(FBlc0003635)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Crop_(FBlc0003636)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Carcass_(FBlc0003637)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Eye_(FBlc0003638)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_FatBody_(FBlc0003639)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Head_(FBlc0003640)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Hindgut_(FBlc0003641)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Midgut_(FBlc0003642)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_RectalPad_(FBlc0003643)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_SalivaryGland_(FBlc0003644)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_ThoracicoAbdominalGanglion_(FBlc0003645)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_MalpighianTubule_(FBlc0003646)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Testis_(FBlc0003647)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_AccessoryGland_(FBlc0003648)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Whole_(FBlc0003649)', 'RNA-Seq_Profile_FlyAtlas2_L3_CNS_(FBlc0003650)', 'RNA-Seq_Profile_FlyAtlas2_L3_FatBody_(FBlc0003651)', 'RNA-Seq_Profile_FlyAtlas2_L3_Hindgut_(FBlc0003652)', 'RNA-Seq_Profile_FlyAtlas2_L3_MalpighianTubule_(FBlc0003653)', 'RNA-Seq_Profile_FlyAtlas2_L3_Midgut_(FBlc0003654)', 'RNA-Seq_Profile_FlyAtlas2_L3_SalivaryGland_(FBlc0003655)', 'RNA-Seq_Profile_FlyAtlas2_L3_Trachea_(FBlc0003656)', 'RNA-Seq_Profile_FlyAtlas2_L3_Carcass_(FBlc0003657)', 'RNA-Seq_Profile_FlyAtlas2_L3_Whole_(FBlc0003658)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Heart_(FBlc0003724)', 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Heart_(FBlc0003725)']). flybase_tables([ analysis, analysisfeature, analysisgrp, analysisgrpmember, analysisprop, audit_chado, cell_line, cell_line_loaderm, cell_line_loadermprop, cell_line_dbxref, cell_line_feature, cell_line_library, cell_line_libraryprop, cell_line_pub, cell_line_relationship, cell_line_strain, cell_line_strainprop, cell_line_synonym, cell_lineprop, cell_lineprop_pub, contact, cv, loaderm, loaderm_dbxref, loaderm_relationship, loadermpath, loadermprop, loadermsynonym, db, dbxref, dbxrefprop, eimage, environment, environment_loaderm, expression, expression_loaderm, expression_loadermprop, expression_image, expression_pub, expressionprop, feature, feature_loaderm, feature_loaderm_dbxref, feature_loadermprop, feature_dbxref, feature_expression, feature_expressionprop, feature_genotype, feature_grpmember, feature_grpmember_pub, feature_humanhealth_dbxref, feature_interaction, feature_interaction_pub, feature_interactionprop, feature_phenotype, feature_pub, feature_pubprop, feature_relationship, feature_relationship_pub, feature_relationshipprop, feature_relationshipprop_pub, feature_synonym, featureloc, featureloc_pub, featuremap, featuremap_pub, featurepos, featureprop, featureprop_pub, featurerange, genotype, genotype_loaderm, genotype_loadermprop, genotype_dbxref, genotype_pub, genotype_synonym, genotypeprop, genotypeprop_pub, grp, grp_loaderm, grp_dbxref, grp_pub, grp_pubprop, grp_relationship, grp_relationship_pub, grp_relationshipprop, grp_synonym, grpmember, grpmember_loaderm, grpmember_pub, grpmemberprop, grpmemberprop_pub, grpprop, grpprop_pub, humanhealth, humanhealth_loaderm, humanhealth_loadermprop, humanhealth_dbxref, humanhealth_dbxrefprop, humanhealth_dbxrefprop_pub, humanhealth_feature, humanhealth_featureprop, humanhealth_phenotype, humanhealth_phenotypeprop, humanhealth_pub, humanhealth_pubprop, humanhealth_relationship, humanhealth_relationship_pub, humanhealth_synonym, humanhealthprop, humanhealthprop_pub, interaction, interaction_cell_line, interaction_loaderm, interaction_loadermprop, interaction_expression, interaction_expressionprop, interaction_group, interaction_group_feature_interaction, interaction_pub, interactionprop, interactionprop_pub, library, library_loaderm, library_loadermprop, library_dbxref, library_dbxrefprop, library_expression, library_expressionprop, library_feature, library_featureprop, library_grpmember, library_humanhealth, library_humanhealthprop, library_interaction, library_pub, library_relationship, library_relationship_pub, library_strain, library_strainprop, library_synonym, libraryprop, libraryprop_pub, lock, organism, organism_loaderm, organism_loadermprop, organism_dbxref, organism_grpmember, organism_library, organism_pub, organismprop, organismprop_pub, phendesc, phenotype, phenotype_comparison, phenotype_comparison_loaderm, phenotype_loaderm, phenstatement, project, pub, pub_dbxref, pub_relationship, pubauthor, pubprop, sql_features, sql_implementation_info, sql_parts, sql_sizing, stock, stock_loaderm, stock_dbxref, stock_genotype, stock_pub, stock_relationship, stock_relationship_pub, stockcollection, stockcollection_stock, stockcollectionprop, stockprop, stockprop_pub, strain, strain_loaderm, strain_loadermprop, strain_dbxref, strain_feature, strain_featureprop, strain_phenotype, strain_phenotypeprop, strain_pub, strain_relationship, strain_relationship_pub, strain_synonym, strainprop, strainprop_pub, synonym, tableinfo, update_track]). table_n_type(allele_genetic_interactions, 1, allele_symbol, _). table_n_type(allele_genetic_interactions, 2, allele_FBal, 'FBal'). table_n_type(allele_genetic_interactions, 3, interaction, _). table_n_type(allele_genetic_interactions, 4, 'FBrf', 'FBrf'). table_n_type(disease_model_annotations, 1, 'FBgn', 'FBgn'). table_n_type(disease_model_annotations, 2, 'Gene_symbol', _). table_n_type(disease_model_annotations, 3, 'HGNC', 'HGNC'). table_n_type(disease_model_annotations, 4, 'DO_qualifier', _). table_n_type(disease_model_annotations, 5, 'DO', _). table_n_type(disease_model_annotations, 6, 'DO_term', _). table_n_type(disease_model_annotations, 7, 'Allele_used_in_model_(FBal)', 'FBal'). table_n_type(disease_model_annotations, 8, 'Allele_used_in_model_(symbol)', _). table_n_type(disease_model_annotations, 9, 'Based_on_orthology_with_(HGNC_ID)', 'HGNC'). table_n_type(disease_model_annotations, 10, 'Based_on_orthology_with_(symbol)', _). table_n_type(disease_model_annotations, 11, 'Evidence/interacting_alleles', _). table_n_type(disease_model_annotations, 12, 'Reference_(FBrf)', 'FBrf'). table_n_type(dmel_gene_sequence_ontology_annotations, 1, gene_primary_id, _). table_n_type(dmel_gene_sequence_ontology_annotations, 2, gene_symbol, _). table_n_type(dmel_gene_sequence_ontology_annotations, 3, so_term_name, _). table_n_type(dmel_gene_sequence_ontology_annotations, 4, so_term_id, _). table_n_type(dmel_human_orthologs_disease, 1, 'Dmel_gene', _). table_n_type(dmel_human_orthologs_disease, 2, 'Dmel_gene_symbol', _). table_n_type(dmel_human_orthologs_disease, 3, 'Human_gene_HGNC', 'HGNC'). table_n_type(dmel_human_orthologs_disease, 4, 'Human_gene_OMIM', 'OMIM'). table_n_type(dmel_human_orthologs_disease, 5, 'Human_gene_symbol', _). table_n_type(dmel_human_orthologs_disease, 6, 'DIOPT_score', _). table_n_type(dmel_human_orthologs_disease, 7, listOf('OMIM_Phenotype_IDs',[',']), 'OMIM'). table_n_type(dmel_human_orthologs_disease, 8, 'OMIM_Phenotype_IDs[name]', 'OMIM'). table_n_type(fbgn_fbtr_fbpp_expanded, 1, organism, _). table_n_type(fbgn_fbtr_fbpp_expanded, 2, gene_type, _). table_n_type(fbgn_fbtr_fbpp_expanded, 3, gene_ID, 'FBgn'). table_n_type(fbgn_fbtr_fbpp_expanded, 4, gene_symbol, _). table_n_type(fbgn_fbtr_fbpp_expanded, 5, gene_fullname, _). table_n_type(fbgn_fbtr_fbpp_expanded, 6, annotation_ID, _). table_n_type(fbgn_fbtr_fbpp_expanded, 7, transcript_type, _). table_n_type(fbgn_fbtr_fbpp_expanded, 8, transcript_ID, 'FBtr'). table_n_type(fbgn_fbtr_fbpp_expanded, 9, transcript_symbol, _). table_n_type(fbgn_fbtr_fbpp_expanded, 10, polypeptide_ID, 'FBpp'). table_n_type(fbgn_fbtr_fbpp_expanded, 11, polypeptide_symbol, _). table_n_type(fbrf_pmid_pmcid_doi, 1, 'FBrf', 'FBrf'). table_n_type(fbrf_pmid_pmcid_doi, 2, 'PMID', 'PMID'). table_n_type(fbrf_pmid_pmcid_doi, 3, 'PMCID', 'PMCID'). table_n_type(fbrf_pmid_pmcid_doi, 4, 'DOI', 'DOI'). table_n_type(fbrf_pmid_pmcid_doi, 5, pub_type, _). table_n_type(fbrf_pmid_pmcid_doi, 6, miniref, _). table_n_type(fbrf_pmid_pmcid_doi, 7, pmid_added, _). table_n_type(gene_genetic_interactions, 1, 'Starting_gene_symbol', _). table_n_type(gene_genetic_interactions, 2, 'Starting_gene_FBgn', 'FBgn'). table_n_type(gene_genetic_interactions, 3, 'Interacting_gene_symbol', _). table_n_type(gene_genetic_interactions, 4, 'Interacting_gene_FBgn', 'FBgn'). table_n_type(gene_genetic_interactions, 5, 'Interaction_type', _). table_n_type(gene_genetic_interactions, 6, 'Publication_FBrf', 'FBrf'). table_n_type(gene_map_table, 1, organism_abbreviation, _). table_n_type(gene_map_table, 2, current_symbol, _). table_n_type(gene_map_table, 3, primary_FBid, 'FBgn'). table_n_type(gene_map_table, 4, recombination_loc, _). table_n_type(gene_map_table, 5, cytogenetic_loc, _). table_n_type(gene_map_table, 6, sequence_loc, _). table_n_type(physical_interactions_mitab, 1, 'ID_Interactor_A', _). table_n_type(physical_interactions_mitab, 2, 'ID_Interactor_B', _). table_n_type(physical_interactions_mitab, 3, 'Alt_ID_Interactor_A', _). table_n_type(physical_interactions_mitab, 4, 'Alt_ID_Interactor_B', _). table_n_type(physical_interactions_mitab, 5, 'Alias_Interactor_A', _). table_n_type(physical_interactions_mitab, 6, 'Alias_Interactor_B', _). table_n_type(physical_interactions_mitab, 7, 'Interaction_Detection_Method', _). table_n_type(physical_interactions_mitab, 8, 'Publication_1st_Author', _). table_n_type(physical_interactions_mitab, 9, 'Publication', _). table_n_type(physical_interactions_mitab, 10, 'Taxid_Interactor_A', _). table_n_type(physical_interactions_mitab, 11, 'Taxid_Interactor_B', _). table_n_type(physical_interactions_mitab, 12, 'Interaction_Type', _). table_n_type(physical_interactions_mitab, 13, 'Source_Database', _). table_n_type(physical_interactions_mitab, 14, 'Interaction_Identifier', _). table_n_type(physical_interactions_mitab, 15, 'Confidence_Value', _). table_n_type(physical_interactions_mitab, 16, 'Expansion_Method', _). table_n_type(physical_interactions_mitab, 17, 'Biological_Role_Interactor_A', _). table_n_type(physical_interactions_mitab, 18, 'Biological_Role_Interactor_B', _). table_n_type(physical_interactions_mitab, 19, 'Experimental_Role_Interactor_A', _). table_n_type(physical_interactions_mitab, 20, 'Experimental_Role_Interactor_B', _). table_n_type(physical_interactions_mitab, 21, 'Type_Interactor_A', _). table_n_type(physical_interactions_mitab, 22, 'Type_Interactor_B', _). table_n_type(physical_interactions_mitab, 23, 'Xref_Interactor_A', _). table_n_type(physical_interactions_mitab, 24, 'Xref_Interactor_B', _). table_n_type(physical_interactions_mitab, 25, 'Interaction_Xref', _). table_n_type(physical_interactions_mitab, 26, 'Annotation_Interactor_A', _). table_n_type(physical_interactions_mitab, 27, 'Annotation_Interactor_B', _). table_n_type(physical_interactions_mitab, 28, 'Interaction_Annotation', _). table_n_type(physical_interactions_mitab, 29, 'Host_Organism', _). table_n_type(physical_interactions_mitab, 30, 'Interaction_Parameters', _). table_n_type(physical_interactions_mitab, 31, 'Creation_Date', _). table_n_type(physical_interactions_mitab, 32, 'Update_Date', _). table_n_type(physical_interactions_mitab, 33, 'Checksum_Interactor_A', _). table_n_type(physical_interactions_mitab, 34, 'Checksum_Interactor_B', _). table_n_type(physical_interactions_mitab, 35, 'Interaction_Checksum', _). table_n_type(physical_interactions_mitab, 36, 'Negative', _). table_n_type(physical_interactions_mitab, 37, 'Feature_Interactor_A', _). table_n_type(physical_interactions_mitab, 38, 'Feature_Interactor_B', _). table_n_type(physical_interactions_mitab, 39, 'Stoichiometry_Interactor_A', _). table_n_type(physical_interactions_mitab, 40, 'Stoichiometry_Interactor_B', _). table_n_type(physical_interactions_mitab, 41, 'Identification_Method_Participant_A', _). table_n_type(physical_interactions_mitab, 42, 'Identification_Method_Participant_B', _). table_n_type(fbal_to_fbgn, 1, 'AlleleID', 'FBal'). table_n_type(fbal_to_fbgn, 2, 'AlleleSymbol', _). table_n_type(fbal_to_fbgn, 3, 'GeneID', 'FBgn'). table_n_type(fbal_to_fbgn, 4, 'GeneSymbol', _). table_n_type(cDNA_clone_data, 1, 'FBcl', 'FBcl'). table_n_type(cDNA_clone_data, 2, organism_abbreviation, _). table_n_type(cDNA_clone_data, 3, clone_name, _). table_n_type(cDNA_clone_data, 4, dataset_metadata_name, _). table_n_type(cDNA_clone_data, 5, cDNA_accession, _). table_n_type(cDNA_clone_data, 6, 'EST_accession', _). table_n_type(genomic_clone, 1, 'FBcl', 'FBcl'). table_n_type(genomic_clone, 2, organism_abbreviation, _). table_n_type(genomic_clone, 3, clone_name, _). table_n_type(genomic_clone, 4, accession, _). /* table_n_type(fbgn_uniprot, 1, primary_FBgn, 'FBgn'). table_n_type(fbgn_uniprot, 2, gene_symbol, _). table_n_type(fbgn_uniprot, 3, 'CG', _). table_n_type(fbgn_uniprot, 4, 'UniprotKB/Swiss-Prot/TrEMBL_accession', _). table_n_type(pmid_fbgn_uniprot, 1, primary_FBgn, 'FBgn'). table_n_type(pmid_fbgn_uniprot, 2, gene_symbol, _). table_n_type(pmid_fbgn_uniprot, 3, 'CG', _). table_n_type(pmid_fbgn_uniprot, 4, 'UniprotKB/Swiss-Prot/TrEMBL_accession', _). */ table_n_type(automated_gene_summaries, 1, primary_FBgn, 'FBgn'). table_n_type(automated_gene_summaries, 2, summary_text, _). table_n_type(best_gene_summary, 1, 'FBgn', 'FBgn'). table_n_type(best_gene_summary, 2, 'Gene_Symbol', _). table_n_type(best_gene_summary, 3, 'Summary_Source', _). table_n_type(best_gene_summary, 4, 'Summary', _). table_n_type('Dmel_enzyme', 1, gene_group_id, _). table_n_type('Dmel_enzyme', 2, gene_group_name, _). table_n_type('Dmel_enzyme', 3, gene_group_GO_id, _). table_n_type('Dmel_enzyme', 4, gene_group_GO_name, _). table_n_type('Dmel_enzyme', 5, gene_group_EC_number, _). table_n_type('Dmel_enzyme', 6, gene_group_EC_name, _). table_n_type('Dmel_enzyme', 7, gene_id, 'FBgn'). table_n_type('Dmel_enzyme', 8, gene_symbol, _). table_n_type('Dmel_enzyme', 9, gene_name, _). table_n_type('Dmel_enzyme', 10, gene_EC_number, _). table_n_type('Dmel_enzyme', 11, gene_EC_name, _). table_n_type(dmel_unique_protein_isoforms, 1, 'FBgn', 'FBgn'). table_n_type(dmel_unique_protein_isoforms, 2, 'FB_gene_symbol', _). table_n_type(dmel_unique_protein_isoforms, 3, representative_protein, _). table_n_type(dmel_unique_protein_isoforms, 4, identical_protein, _). table_n_type(fbgn_annotation_ID, 1, gene_symbol, _). table_n_type(fbgn_annotation_ID, 2, organism_abbreviation, _). table_n_type(fbgn_annotation_ID, 3, primary_FBgn, 'FBgn'). table_n_type(fbgn_annotation_ID, 4, secondary_FBgn, 'FBgn'). table_n_type(fbgn_annotation_ID, 5, annotation_ID, 'FBan'). table_n_type(fbgn_annotation_ID, 6, secondary_annotation_ID, 'FBan'). table_n_type(fbgn_exons2affy1_overlaps, 1, 'FBgn', 'FBgn'). table_n_type(fbgn_exons2affy1_overlaps, 2, affy, _). table_n_type(fbgn_exons2affy2_overlaps, 1, 'FBgn', 'FBgn'). table_n_type(fbgn_exons2affy2_overlaps, 2, affy, _). table_n_type(fbgn_fbtr_fbpp, 1, 'FBgn', 'FBgn'). table_n_type(fbgn_fbtr_fbpp, 2, 'FBtr', 'FBtr'). table_n_type(fbgn_fbtr_fbpp, 3, 'FBpp', 'FBpp'). table_n_type(fbgn_gleanr, 1, organism_abbreviation, _). table_n_type(fbgn_gleanr, 2, gene_symbol, _). table_n_type(fbgn_gleanr, 3, primary_FBgn, 'FBgn'). table_n_type(fbgn_gleanr, 4, 'GLEANR', _). /* table_n_type(fbgn_NAseq_Uniprot, 1, gene_symbol, _). table_n_type(fbgn_NAseq_Uniprot, 2, organism_abbreviation, _). table_n_type(fbgn_NAseq_Uniprot, 3, primary_FBgn, 'FBgn'). table_n_type(fbgn_NAseq_Uniprot, 4, nucleotide_accession, _). table_n_type(fbgn_NAseq_Uniprot, 5, na_based_protein_accession, _). table_n_type(fbgn_NAseq_Uniprot, 6, 'UniprotKB/Swiss-Prot/TrEMBL_accession', _). table_n_type(fbgn_NAseq_Uniprot, 7, 'EntrezGene', _). table_n_type(fbgn_NAseq_Uniprot, 8, 'RefSeq_transcripts', _). table_n_type(fbgn_NAseq_Uniprot, 9, 'RefSeq_proteins', _). */ table_n_type(gene_functional_complementation, 1, 'Dmel_gene_symbol', _). table_n_type(gene_functional_complementation, 2, 'Dmel_gene_FBgn', 'FBgn'). table_n_type(gene_functional_complementation, 3, ortholog_gene_symbol, _). table_n_type(gene_functional_complementation, 4, ortholog_gene_FBgn_ID, 'FBgn'). table_n_type(gene_functional_complementation, 5, reference_FBrf, 'FBrf'). table_n_type(gene_group, 1, 'FB_group', 'FBgg'). table_n_type(gene_group, 2, 'FB_group_symbol', _). table_n_type(gene_group, 3, 'FB_group_name', _). table_n_type(gene_group, 4, 'Parent_FB_group', 'FBgg'). table_n_type(gene_group, 5, 'Parent_FB_group_symbol', _). table_n_type(gene_group, 6, 'Group_member_FB_gene', 'FBgn'). table_n_type(gene_group, 7, 'Group_member_FB_gene_symbol', _). table_n_type(gene_groups_HGNC, 1, 'FB_group', 'FBgg'). table_n_type(gene_groups_HGNC, 2, 'FB_group_symbol', _). table_n_type(gene_groups_HGNC, 3, 'FB_group_name', _). table_n_type(gene_groups_HGNC, 4, 'Parent_FB_group', 'FBgg'). table_n_type(gene_groups_HGNC, 5, 'Parent_FB_group_symbol', _). table_n_type(gene_groups_HGNC, 6, 'Group_member_FB_gene', 'FBgn'). table_n_type(gene_groups_HGNC, 7, 'Group_member_FB_gene_symbol', _). table_n_type(gene_rpkm_matrix, 1, gene_primary_id, 'FBgn'). table_n_type(gene_rpkm_matrix, 2, gene_symbol, _). table_n_type(gene_rpkm_matrix, 3, gene_fullname, _). table_n_type(gene_rpkm_matrix, 4, gene_type, _). table_n_type(gene_rpkm_matrix, 5, 'BCM_1_E2-4hr_(FBlc0000061)', 'FBlc'). table_n_type(gene_rpkm_matrix, 6, 'BCM_1_E14-16hr_(FBlc0000062)', 'FBlc'). table_n_type(gene_rpkm_matrix, 7, 'BCM_1_E2-16hr_(FBlc0000063)', 'FBlc'). table_n_type(gene_rpkm_matrix, 8, 'BCM_1_E2-16hr100_(FBlc0000064)', 'FBlc'). table_n_type(gene_rpkm_matrix, 9, 'BCM_1_L3i_(FBlc0000065)', 'FBlc'). table_n_type(gene_rpkm_matrix, 10, 'BCM_1_L3i100_(FBlc0000066)', 'FBlc'). table_n_type(gene_rpkm_matrix, 11, 'BCM_1_P3d_(FBlc0000067)', 'FBlc'). table_n_type(gene_rpkm_matrix, 12, 'BCM_1_FA3d_(FBlc0000068)', 'FBlc'). table_n_type(gene_rpkm_matrix, 13, 'BCM_1_MA3d_(FBlc0000069)', 'FBlc'). table_n_type(gene_rpkm_matrix, 14, 'BCM_1_P_(FBlc0000070)', 'FBlc'). table_n_type(gene_rpkm_matrix, 15, 'BCM_1_L_(FBlc0000071)', 'FBlc'). table_n_type(gene_rpkm_matrix, 16, 'BCM_1_A17d_(FBlc0000072)', 'FBlc'). table_n_type(gene_rpkm_report, 1, 'Release_ID', _). table_n_type(gene_rpkm_report, 2, 'FBgn', 'FBgn'). table_n_type(gene_rpkm_report, 3, 'GeneSymbol', _). table_n_type(gene_rpkm_report, 4, 'Parent_library_FBlc', 'FBlc'). table_n_type(gene_rpkm_report, 5, 'Parent_library_name', _). table_n_type(gene_rpkm_report, 6, 'RNASource_FBlc', 'FBlc'). table_n_type(gene_rpkm_report, 7, 'RNASource_name', _). table_n_type(gene_rpkm_report, 8, 'RPKM_value', _). table_n_type(gene_rpkm_report, 9, 'Bin_value', _). table_n_type(gene_rpkm_report, 10, 'Unique_exon_base_count', _). table_n_type(gene_rpkm_report, 11, 'Total_exon_base_count', _). table_n_type(gene_rpkm_report, 12, 'Count_used', _). table_n_type(gene_snapshots, 1, 'FBgn', 'FBgn'). table_n_type(gene_snapshots, 2, 'GeneSymbol', _). table_n_type(gene_snapshots, 3, 'GeneName', _). table_n_type(gene_snapshots, 4, datestamp, _). table_n_type(gene_snapshots, 5, gene_snapshot_text, _). table_n_type(pathway_group, 1, 'FB_group', 'FBgg'). table_n_type(pathway_group, 2, 'FB_group_symbol', _). table_n_type(pathway_group, 3, 'FB_group_name', _). table_n_type(pathway_group, 4, 'Parent_FB_group', 'FBgg'). table_n_type(pathway_group, 5, 'Parent_FB_group_symbol', _). table_n_type(pathway_group, 6, 'Group_member_FB_gene', 'FBgn'). table_n_type(pathway_group, 7, 'Group_member_FB_gene_symbol', _). table_n_type(insertion_mapping, 1, insertion_symbol, _). table_n_type(insertion_mapping, 2, 'FBti', 'FBti'). table_n_type(insertion_mapping, 3, genomic_location, _). table_n_type(insertion_mapping, 4, range, _). table_n_type(insertion_mapping, 5, orientation, _). table_n_type(insertion_mapping, 6, estimated_cytogenetic_location, _). table_n_type(insertion_mapping, 7, observed_cytogenetic_location, _). table_n_type('cyto-genetic-seq', 1, 'Cytogenetic_map_position', _). table_n_type('cyto-genetic-seq', 2, 'Genetic_map_position', _). table_n_type('cyto-genetic-seq', 3, 'Sequence_coordinates_(release_6)', _). table_n_type('cyto-genetic-seq', 4, 'R6_conversion_notes', _). table_n_type(dataset_metadata, 1, 'Dataset_Metadata_ID', _). table_n_type(dataset_metadata, 2, 'Dataset_Metadata_Name', _). table_n_type(dataset_metadata, 3, 'Item_ID', _). table_n_type(dataset_metadata, 4, 'Item_Name', _). table_n_type(dmel_paralogs, 1, 'FBgn', 'FBgn'). table_n_type(dmel_paralogs, 2, 'GeneSymbol', _). table_n_type(dmel_paralogs, 3, 'Arm/Scaffold', _). table_n_type(dmel_paralogs, 4, 'Location', _). table_n_type(dmel_paralogs, 5, 'Strand', _). table_n_type(dmel_paralogs, 6, 'Paralog_FBgn', 'FBgn'). table_n_type(dmel_paralogs, 7, 'Paralog_GeneSymbol', _). table_n_type(dmel_paralogs, 8, 'Paralog_Arm/Scaffold', _). table_n_type(dmel_paralogs, 9, 'Paralog_Location', _). table_n_type(dmel_paralogs, 10, 'Paralog_Strand', _). table_n_type(dmel_paralogs, 11, 'DIOPT_score', _). table_n_type(entity_publication, 1, entity_id, _). table_n_type(entity_publication, 2, entity_name, _). table_n_type(entity_publication, 3, 'FlyBase_publication', 'FBrf'). table_n_type(entity_publication, 4, 'PubMed', _). table_n_type(organism_list, 1, genus, _). table_n_type(organism_list, 2, species, _). table_n_type(organism_list, 3, abbreviation, _). table_n_type(organism_list, 4, common_name, _). table_n_type(organism_list, 5, 'NCBI_taxon', _). table_n_type(organism_list, 6, 'drosophilid?', _). table_n_type(stocks, 1, stock_id, 'FBst'). table_n_type(stocks, 2, dbxref_id, _). table_n_type(stocks, 3, organism_id, _). table_n_type(stocks, 4, name, _). table_n_type(stocks, 5, uniquename, _). table_n_type(stocks, 6, description, _). table_n_type(stocks, 7, type_id, _). table_n_type(stocks, 8, is_obsolete, _). table_n_type(synonym, 1, primary_FBid, 'FBgn'). table_n_type(synonym, 2, organism_abbreviation, _). table_n_type(synonym, 3, current_symbol, _). table_n_type(synonym, 4, current_fullname, _). table_n_type(synonym, 5, fullname_synonym, _). table_n_type(synonym, 6, symbol_synonym, _). guess_rest(P,N,T,Guess):- table_n_type(P,N,T,Guess),var(Guess),fb_pred(P,A),functor(C,P,A),arg(N,C,Guess),once(call(C)). :- dynamic numeric_value_p_n/3. :- module_transparent numeric_value_p_n/3. numeric_value_p_n(dmel_human_orthologs_disease, 6, 'DIOPT_score'). numeric_value_p_n(dmel_human_orthologs_disease, 7, 'OMIM_Phenotype_IDs'). numeric_value_p_n(fbrf_pmid_pmcid_doi, 2, 'PMID'). numeric_value_p_n(pmid_fbgn_uniprot, 2, gene_symbol). numeric_value_p_n(fbgn_NAseq_Uniprot, 7, 'EntrezGene'). numeric_value_p_n(gene_groups_HGNC, 4, 'Parent_FB_group'). numeric_value_p_n(gene_rpkm_matrix, 5, 'BCM_1_E2-4hr_(FBlc0000061)'). numeric_value_p_n(gene_rpkm_matrix, 6, 'BCM_1_E14-16hr_(FBlc0000062)'). numeric_value_p_n(gene_rpkm_matrix, 7, 'BCM_1_E2-16hr_(FBlc0000063)'). numeric_value_p_n(gene_rpkm_matrix, 8, 'BCM_1_E2-16hr100_(FBlc0000064)'). numeric_value_p_n(gene_rpkm_matrix, 9, 'BCM_1_L3i_(FBlc0000065)'). numeric_value_p_n(gene_rpkm_matrix, 10, 'BCM_1_L3i100_(FBlc0000066)'). numeric_value_p_n(gene_rpkm_matrix, 11, 'BCM_1_P3d_(FBlc0000067)'). numeric_value_p_n(gene_rpkm_matrix, 12, 'BCM_1_FA3d_(FBlc0000068)'). numeric_value_p_n(gene_rpkm_matrix, 13, 'BCM_1_MA3d_(FBlc0000069)'). numeric_value_p_n(gene_rpkm_matrix, 14, 'BCM_1_P_(FBlc0000070)'). numeric_value_p_n(gene_rpkm_matrix, 15, 'BCM_1_L_(FBlc0000071)'). numeric_value_p_n(gene_rpkm_matrix, 16, 'BCM_1_A17d_(FBlc0000072)'). numeric_value_p_n(gene_rpkm_matrix, 17, 'mE_mRNA_em0-2hr_(FBlc0000086)'). numeric_value_p_n(gene_rpkm_matrix, 18, 'mE_mRNA_em2-4hr_(FBlc0000087)'). numeric_value_p_n(gene_rpkm_matrix, 19, 'mE_mRNA_em4-6hr_(FBlc0000088)'). numeric_value_p_n(gene_rpkm_matrix, 20, 'mE_mRNA_em6-8hr_(FBlc0000089)'). numeric_value_p_n(gene_rpkm_matrix, 21, 'mE_mRNA_em8-10hr_(FBlc0000090)'). numeric_value_p_n(gene_rpkm_matrix, 22, 'mE_mRNA_em10-12hr_(FBlc0000091)'). numeric_value_p_n(gene_rpkm_matrix, 23, 'mE_mRNA_em12-14hr_(FBlc0000092)'). numeric_value_p_n(gene_rpkm_matrix, 24, 'mE_mRNA_em14-16hr_(FBlc0000093)'). numeric_value_p_n(gene_rpkm_matrix, 25, 'mE_mRNA_em16-18hr_(FBlc0000094)'). numeric_value_p_n(gene_rpkm_matrix, 26, 'mE_mRNA_em18-20hr_(FBlc0000095)'). numeric_value_p_n(gene_rpkm_matrix, 27, 'mE_mRNA_em20-22hr_(FBlc0000096)'). numeric_value_p_n(gene_rpkm_matrix, 28, 'mE_mRNA_em22-24hr_(FBlc0000097)'). numeric_value_p_n(gene_rpkm_matrix, 29, 'mE_mRNA_L1_(FBlc0000098)'). numeric_value_p_n(gene_rpkm_matrix, 30, 'mE_mRNA_L2_(FBlc0000099)'). numeric_value_p_n(gene_rpkm_matrix, 31, 'mE_mRNA_L3_12hr_(FBlc0000100)'). numeric_value_p_n(gene_rpkm_matrix, 32, 'mE_mRNA_L3_PS1-2_(FBlc0000101)'). numeric_value_p_n(gene_rpkm_matrix, 33, 'mE_mRNA_L3_PS3-6_(FBlc0000102)'). numeric_value_p_n(gene_rpkm_matrix, 34, 'mE_mRNA_L3_PS7-9_(FBlc0000103)'). numeric_value_p_n(gene_rpkm_matrix, 35, 'mE_mRNA_WPP_(FBlc0000104)'). numeric_value_p_n(gene_rpkm_matrix, 36, 'mE_mRNA_P5_(FBlc0000105)'). numeric_value_p_n(gene_rpkm_matrix, 37, 'mE_mRNA_P6_(FBlc0000106)'). numeric_value_p_n(gene_rpkm_matrix, 38, 'mE_mRNA_P8_(FBlc0000107)'). numeric_value_p_n(gene_rpkm_matrix, 39, 'mE_mRNA_P9-10_(FBlc0000108)'). numeric_value_p_n(gene_rpkm_matrix, 40, 'mE_mRNA_P15_(FBlc0000109)'). numeric_value_p_n(gene_rpkm_matrix, 41, 'mE_mRNA_AdF_Ecl_1days_(FBlc0000110)'). numeric_value_p_n(gene_rpkm_matrix, 42, 'mE_mRNA_AdF_Ecl_5days_(FBlc0000111)'). numeric_value_p_n(gene_rpkm_matrix, 43, 'mE_mRNA_AdF_Ecl_30days_(FBlc0000112)'). numeric_value_p_n(gene_rpkm_matrix, 44, 'mE_mRNA_AdM_Ecl_1days_(FBlc0000113)'). numeric_value_p_n(gene_rpkm_matrix, 45, 'mE_mRNA_AdM_Ecl_5days_(FBlc0000114)'). numeric_value_p_n(gene_rpkm_matrix, 46, 'mE_mRNA_AdM_Ecl_30days_(FBlc0000115)'). numeric_value_p_n(gene_rpkm_matrix, 47, 'mE_mRNA_A_MateF_1d_head_(FBlc0000207)'). numeric_value_p_n(gene_rpkm_matrix, 48, 'mE_mRNA_A_MateF_4d_ovary_(FBlc0000208)'). numeric_value_p_n(gene_rpkm_matrix, 49, 'mE_mRNA_A_MateM_1d_head_(FBlc0000209)'). numeric_value_p_n(gene_rpkm_matrix, 50, 'mE_mRNA_A_VirF_1d_head_(FBlc0000210)'). numeric_value_p_n(gene_rpkm_matrix, 51, 'mE_mRNA_A_VirF_4d_head_(FBlc0000211)'). numeric_value_p_n(gene_rpkm_matrix, 52, 'mE_mRNA_A_MateF_20d_head_(FBlc0000212)'). numeric_value_p_n(gene_rpkm_matrix, 53, 'mE_mRNA_A_MateF_4d_head_(FBlc0000213)'). numeric_value_p_n(gene_rpkm_matrix, 54, 'mE_mRNA_A_MateM_20d_head_(FBlc0000214)'). numeric_value_p_n(gene_rpkm_matrix, 55, 'mE_mRNA_A_MateM_4d_acc_gland_(FBlc0000215)'). numeric_value_p_n(gene_rpkm_matrix, 56, 'mE_mRNA_A_MateM_4d_head_(FBlc0000216)'). numeric_value_p_n(gene_rpkm_matrix, 57, 'mE_mRNA_A_MateM_4d_testis_(FBlc0000217)'). numeric_value_p_n(gene_rpkm_matrix, 58, 'mE_mRNA_A_1d_carcass_(FBlc0000218)'). numeric_value_p_n(gene_rpkm_matrix, 59, 'mE_mRNA_A_1d_dig_sys_(FBlc0000219)'). numeric_value_p_n(gene_rpkm_matrix, 60, 'mE_mRNA_A_20d_carcass_(FBlc0000220)'). numeric_value_p_n(gene_rpkm_matrix, 61, 'mE_mRNA_A_20d_dig_sys_(FBlc0000221)'). numeric_value_p_n(gene_rpkm_matrix, 62, 'mE_mRNA_A_4d_carcass_(FBlc0000222)'). numeric_value_p_n(gene_rpkm_matrix, 63, 'mE_mRNA_A_4d_dig_sys_(FBlc0000223)'). numeric_value_p_n(gene_rpkm_matrix, 64, 'mE_mRNA_P8_CNS_(FBlc0000224)'). numeric_value_p_n(gene_rpkm_matrix, 65, 'mE_mRNA_L3_CNS_(FBlc0000225)'). numeric_value_p_n(gene_rpkm_matrix, 66, 'mE_mRNA_L3_Wand_carcass_(FBlc0000226)'). numeric_value_p_n(gene_rpkm_matrix, 67, 'mE_mRNA_L3_Wand_dig_sys_(FBlc0000227)'). numeric_value_p_n(gene_rpkm_matrix, 68, 'mE_mRNA_L3_Wand_fat_(FBlc0000228)'). numeric_value_p_n(gene_rpkm_matrix, 69, 'mE_mRNA_L3_Wand_imag_disc_(FBlc0000229)'). numeric_value_p_n(gene_rpkm_matrix, 70, 'mE_mRNA_L3_Wand_saliv_(FBlc0000230)'). numeric_value_p_n(gene_rpkm_matrix, 71, 'mE_mRNA_A_VirF_20d_head_(FBlc0000231)'). numeric_value_p_n(gene_rpkm_matrix, 72, 'mE_mRNA_A_VirF_4d_ovary_(FBlc0000232)'). numeric_value_p_n(gene_rpkm_matrix, 73, 'mE_mRNA_WPP_fat_(FBlc0000233)'). numeric_value_p_n(gene_rpkm_matrix, 74, 'mE_mRNA_WPP_saliv_(FBlc0000234)'). numeric_value_p_n(gene_rpkm_matrix, 75, 'mE_mRNA_P8_fat_(FBlc0000235)'). numeric_value_p_n(gene_rpkm_matrix, 76, 'mE_mRNA_A_4d_Cold1_(FBlc0000237)'). numeric_value_p_n(gene_rpkm_matrix, 77, 'mE_mRNA_A_4d_Cold2_(FBlc0000238)'). numeric_value_p_n(gene_rpkm_matrix, 78, 'mE_mRNA_L3_Cu_0.5mM_(FBlc0000239)'). numeric_value_p_n(gene_rpkm_matrix, 79, 'mE_mRNA_L3_late_Zn_5mM_(FBlc0000240)'). numeric_value_p_n(gene_rpkm_matrix, 80, 'mE_mRNA_A_4d_Cu_15mM_(FBlc0000241)'). numeric_value_p_n(gene_rpkm_matrix, 81, 'mE_mRNA_A_4d_Zn_4.5mM_(FBlc0000242)'). numeric_value_p_n(gene_rpkm_matrix, 82, 'mE_mRNA_A_4d_Caffeine_25mg/ml_(FBlc0000243)'). numeric_value_p_n(gene_rpkm_matrix, 83, 'mE_mRNA_A_4d_Caffeine_2.5mg/ml_(FBlc0000244)'). numeric_value_p_n(gene_rpkm_matrix, 84, 'mE_mRNA_L3_Caffeine_1.5mg/ml_(FBlc0000245)'). numeric_value_p_n(gene_rpkm_matrix, 85, 'mE_mRNA_A_4d_Cd_0.1M_(FBlc0000246)'). numeric_value_p_n(gene_rpkm_matrix, 86, 'mE_mRNA_A_4d_Cd_0.05M_(FBlc0000247)'). numeric_value_p_n(gene_rpkm_matrix, 87, 'mE_mRNA_L3_Cd_12h_(FBlc0000248)'). numeric_value_p_n(gene_rpkm_matrix, 88, 'mE_mRNA_L3_Cd_6hr_(FBlc0000249)'). numeric_value_p_n(gene_rpkm_matrix, 89, 'mE_mRNA_A_4d_Paraquat_5mM_(FBlc0000250)'). numeric_value_p_n(gene_rpkm_matrix, 90, 'mE_mRNA_A_4d_Paraquat_10mM_(FBlc0000251)'). numeric_value_p_n(gene_rpkm_matrix, 91, 'mE_mRNA_L3_Rotenone_8ug_(FBlc0000252)'). numeric_value_p_n(gene_rpkm_matrix, 92, 'mE_mRNA_L3_Rotenone_2ug_(FBlc0000253)'). numeric_value_p_n(gene_rpkm_matrix, 93, 'mE_mRNA_L3_EtOH_10_(FBlc0000254)'). numeric_value_p_n(gene_rpkm_matrix, 94, 'mE_mRNA_L3_EtOH_5_(FBlc0000255)'). numeric_value_p_n(gene_rpkm_matrix, 95, 'mE_mRNA_L3_EtOH_2.5_(FBlc0000256)'). numeric_value_p_n(gene_rpkm_matrix, 96, 'mE_mRNA_A_4d_Heatshock_(FBlc0000257)'). numeric_value_p_n(gene_rpkm_matrix, 97, 'mE_mRNA_A_10d_Resveratrol_100uM_(FBlc0000672)'). numeric_value_p_n(gene_rpkm_matrix, 98, 'mE_mRNA_A_10d_Rotenone_Starved_(FBlc0000673)'). numeric_value_p_n(gene_rpkm_matrix, 99, 'mE_mRNA_F_Sindbis_virus_(FBlc0000674)'). numeric_value_p_n(gene_rpkm_matrix, 100, 'mE_mRNA_L_Sindbis_virus_(FBlc0000675)'). numeric_value_p_n(gene_rpkm_matrix, 101, 'mE_mRNA_M_Sindbis_virus_(FBlc0000676)'). numeric_value_p_n(gene_rpkm_matrix, 102, 'mE_mRNA_P_Sindbis_virus_(FBlc0000677)'). numeric_value_p_n(gene_rpkm_matrix, 103, 'mE_mRNA_CME-W2_cells_(FBlc0000261)'). numeric_value_p_n(gene_rpkm_matrix, 104, 'mE_mRNA_GM2_cells_(FBlc0000262)'). numeric_value_p_n(gene_rpkm_matrix, 105, 'mE_mRNA_mbn2_cells_(FBlc0000263)'). numeric_value_p_n(gene_rpkm_matrix, 106, 'mE_mRNA_BG2-c2_cells_(FBlc0000264)'). numeric_value_p_n(gene_rpkm_matrix, 107, 'mE_mRNA_D20-c5_cells_(FBlc0000265)'). numeric_value_p_n(gene_rpkm_matrix, 108, 'mE_mRNA_S3_cells_(FBlc0000266)'). numeric_value_p_n(gene_rpkm_matrix, 109, 'mE_mRNA_1182-4H_cells_(FBlc0000267)'). numeric_value_p_n(gene_rpkm_matrix, 110, 'mE_mRNA_CME_L1_cells_(FBlc0000268)'). numeric_value_p_n(gene_rpkm_matrix, 111, 'mE_mRNA_Kc167_cells_(FBlc0000269)'). numeric_value_p_n(gene_rpkm_matrix, 112, 'mE_mRNA_BG1-c1_cells_(FBlc0000270)'). numeric_value_p_n(gene_rpkm_matrix, 113, 'mE_mRNA_D11_cells_(FBlc0000271)'). numeric_value_p_n(gene_rpkm_matrix, 114, 'mE_mRNA_D16-c3_cells_(FBlc0000272)'). numeric_value_p_n(gene_rpkm_matrix, 115, 'mE_mRNA_D17-c3_cells_(FBlc0000273)'). numeric_value_p_n(gene_rpkm_matrix, 116, 'mE_mRNA_D21_cells_(FBlc0000274)'). numeric_value_p_n(gene_rpkm_matrix, 117, 'mE_mRNA_D32_cells_(FBlc0000275)'). numeric_value_p_n(gene_rpkm_matrix, 118, 'mE_mRNA_D4-c1_cells_(FBlc0000276)'). numeric_value_p_n(gene_rpkm_matrix, 119, 'mE_mRNA_D8_cells_(FBlc0000277)'). numeric_value_p_n(gene_rpkm_matrix, 120, 'mE_mRNA_D9_cells_(FBlc0000278)'). numeric_value_p_n(gene_rpkm_matrix, 121, 'mE_mRNA_S1_cells_(FBlc0000279)'). numeric_value_p_n(gene_rpkm_matrix, 122, 'mE_mRNA_S2R+_cells_(FBlc0000280)'). numeric_value_p_n(gene_rpkm_matrix, 123, 'mE_mRNA_Sg4_cells_(FBlc0000281)'). numeric_value_p_n(gene_rpkm_matrix, 124, 'mE_mRNA_OSS_cells_(FBlc0000282)'). numeric_value_p_n(gene_rpkm_matrix, 125, 'mE_mRNA_OSC_cells_(FBlc0000283)'). numeric_value_p_n(gene_rpkm_matrix, 126, 'mE_mRNA_fGS_cells_(FBlc0000284)'). numeric_value_p_n(gene_rpkm_matrix, 127, 'Knoblich_mRNA_L3_CNS_neuroblast_(FBlc0000505)'). numeric_value_p_n(gene_rpkm_matrix, 128, 'Knoblich_mRNA_L3_CNS_neuron_(FBlc0000506)'). numeric_value_p_n(gene_rpkm_matrix, 129, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Brain_(FBlc0003619)'). numeric_value_p_n(gene_rpkm_matrix, 130, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Crop_(FBlc0003620)'). numeric_value_p_n(gene_rpkm_matrix, 131, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Carcass_(FBlc0003621)'). numeric_value_p_n(gene_rpkm_matrix, 132, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Eye_(FBlc0003622)'). numeric_value_p_n(gene_rpkm_matrix, 133, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_FatBody_(FBlc0003623)'). numeric_value_p_n(gene_rpkm_matrix, 134, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Head_(FBlc0003624)'). numeric_value_p_n(gene_rpkm_matrix, 135, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Hindgut_(FBlc0003625)'). numeric_value_p_n(gene_rpkm_matrix, 136, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Midgut_(FBlc0003626)'). numeric_value_p_n(gene_rpkm_matrix, 137, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Ovary_(FBlc0003627)'). numeric_value_p_n(gene_rpkm_matrix, 138, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_RectalPad_(FBlc0003628)'). numeric_value_p_n(gene_rpkm_matrix, 139, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_SalivaryGland_(FBlc0003629)'). numeric_value_p_n(gene_rpkm_matrix, 140, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_ThoracicoAbdominalGanglion_(FBlc0003630)'). numeric_value_p_n(gene_rpkm_matrix, 141, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_MalpighianTubule_(FBlc0003631)'). numeric_value_p_n(gene_rpkm_matrix, 142, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Mated_Spermathecum_(FBlc0003632)'). numeric_value_p_n(gene_rpkm_matrix, 143, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Virgin_Spermathecum_(FBlc0003633)'). numeric_value_p_n(gene_rpkm_matrix, 144, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Whole_(FBlc0003634)'). numeric_value_p_n(gene_rpkm_matrix, 145, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Brain_(FBlc0003635)'). numeric_value_p_n(gene_rpkm_matrix, 146, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Crop_(FBlc0003636)'). numeric_value_p_n(gene_rpkm_matrix, 147, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Carcass_(FBlc0003637)'). numeric_value_p_n(gene_rpkm_matrix, 148, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Eye_(FBlc0003638)'). numeric_value_p_n(gene_rpkm_matrix, 149, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_FatBody_(FBlc0003639)'). numeric_value_p_n(gene_rpkm_matrix, 150, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Head_(FBlc0003640)'). numeric_value_p_n(gene_rpkm_matrix, 151, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Hindgut_(FBlc0003641)'). numeric_value_p_n(gene_rpkm_matrix, 152, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Midgut_(FBlc0003642)'). numeric_value_p_n(gene_rpkm_matrix, 153, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_RectalPad_(FBlc0003643)'). numeric_value_p_n(gene_rpkm_matrix, 154, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_SalivaryGland_(FBlc0003644)'). numeric_value_p_n(gene_rpkm_matrix, 155, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_ThoracicoAbdominalGanglion_(FBlc0003645)'). numeric_value_p_n(gene_rpkm_matrix, 156, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_MalpighianTubule_(FBlc0003646)'). numeric_value_p_n(gene_rpkm_matrix, 157, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Testis_(FBlc0003647)'). numeric_value_p_n(gene_rpkm_matrix, 158, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_AccessoryGland_(FBlc0003648)'). numeric_value_p_n(gene_rpkm_matrix, 159, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Whole_(FBlc0003649)'). numeric_value_p_n(gene_rpkm_matrix, 160, 'RNA-Seq_Profile_FlyAtlas2_L3_CNS_(FBlc0003650)'). numeric_value_p_n(gene_rpkm_matrix, 161, 'RNA-Seq_Profile_FlyAtlas2_L3_FatBody_(FBlc0003651)'). numeric_value_p_n(gene_rpkm_matrix, 162, 'RNA-Seq_Profile_FlyAtlas2_L3_Hindgut_(FBlc0003652)'). numeric_value_p_n(gene_rpkm_matrix, 163, 'RNA-Seq_Profile_FlyAtlas2_L3_MalpighianTubule_(FBlc0003653)'). numeric_value_p_n(gene_rpkm_matrix, 164, 'RNA-Seq_Profile_FlyAtlas2_L3_Midgut_(FBlc0003654)'). numeric_value_p_n(gene_rpkm_matrix, 165, 'RNA-Seq_Profile_FlyAtlas2_L3_SalivaryGland_(FBlc0003655)'). numeric_value_p_n(gene_rpkm_matrix, 166, 'RNA-Seq_Profile_FlyAtlas2_L3_Trachea_(FBlc0003656)'). numeric_value_p_n(gene_rpkm_matrix, 167, 'RNA-Seq_Profile_FlyAtlas2_L3_Carcass_(FBlc0003657)'). numeric_value_p_n(gene_rpkm_matrix, 168, 'RNA-Seq_Profile_FlyAtlas2_L3_Whole_(FBlc0003658)'). numeric_value_p_n(gene_rpkm_matrix, 169, 'RNA-Seq_Profile_FlyAtlas2_Adult_Female_Heart_(FBlc0003724)'). numeric_value_p_n(gene_rpkm_matrix, 170, 'RNA-Seq_Profile_FlyAtlas2_Adult_Male_Heart_(FBlc0003725)'). numeric_value_p_n(gene_rpkm_report, 8, 'RPKM_value'). numeric_value_p_n(gene_rpkm_report, 9, 'Bin_value'). numeric_value_p_n(gene_rpkm_report, 10, 'Unique_exon_base_count'). numeric_value_p_n(gene_rpkm_report, 11, 'Total_exon_base_count'). numeric_value_p_n(gene_snapshots, 4, datestamp). numeric_value_p_n(insertion_mapping, 5, orientation). numeric_value_p_n(dmel_paralogs, 5, 'Strand'). numeric_value_p_n(dmel_paralogs, 10, 'Paralog_Strand'). numeric_value_p_n(dmel_paralogs, 11, 'DIOPT_score'). numeric_value_p_n(entity_publication, 4, 'PubMed'). numeric_value_p_n(organism_list, 5, 'NCBI_taxon'). ncRNA_genes_fb_scheme( ' { "$schema": "http://json-schema.org/draft-04/schema#", "title": "RNAcentral ncRNA object", "description": "A sequence to import to RNAcentral. These entries must not be pseudogenes or coding RNA transcripts.", "id": "ncrna.json#", "type": "object", "required": ["primaryId", "taxonId", "soTermId", "sequence", "url"], "additionalProperties": false, "properties": { "primaryId": { "$ref" : "global-id.json#/properties/globalId", "description": "The prefixed primary (MOD) ID for an entity. For internal use, e.g. FLYBASE:FBgn0003301, MGI:87917." }, "taxonId": { "$ref" : "global-id.json#/properties/globalId", "description" : "The NCBI taxonId for the species of the gene entity." }, "soTermId": { "$ref" : "global-id.json#/properties/globalId", "description": "The SO Term that represents as best we can, the bioType, or featureType of the object in the file." }, "ecoTermId": { "$ref" : "global-id.json#/properties/globalId", "description": "The ECO Term that represents the evidence for this sequence having the given SO term." }, "sequence": { "$ref": "sequence.json#properties/sequence", "description": "The DNA sequence of this entry." }, "name": { "type": "string", "description": "The name of this sequence." }, "description": { "type": "string", "description": "An informative human readable description. If not provided then it will be generated using the name and species information." }, "symbol": { "type": "string", "description": "The symbol for this ncRNA" }, "symbolSynonyms": { "type": "array", "items": { "type": "string" }, "uniqueItems": true, "description": "A list of other symbols for the ncRNA" }, "version": { "description": "The version of this sequence, if any" }, "gene": { "$ref": "gene.json#" }, "crossReferenceIds": { "description":"Collection holding a limited set (for now) of database cross references for each gene. That set is defined in geneCrossReferences.json dataSoruce enumeration. NCBI GENE means just the NCBI Gene reference. UniProtKB is swissprot and trembl. Ensembl is just the GENE id for now (not transcript nor protein).", "type": "array", "items": { "$ref" : "global-id.json#/properties/globalId" }, "uniqueItems": true }, "genomeLocations": { "description":"Collection holding the set of locations for this sequence. This should include the exon/intron structure of the sequence.", "type": "array", "items": { "$ref" : "location.json#" }, "uniqueItems": true }, "url": { "type": "string", "format": "uri", "description": "URL to the page for this entry in the database" }, "externalUrl": { "type": "string", "format": "uri", "description": "URL to a synopsis outside the database, like wikipedia." }, "secondaryStructure": { "description": "The secondary structure in dot-bracket notation for this sequence", "$ref": "secondary-structure.json#/properties/dot_bracket" }, "publications": { "description": "List of references to associate with this sequence.", "type": "array", "items": { "anyOf": [ { "$ref": "publications.json#/properties/pubMedId" }, { "$ref": "publications.json#/properties/doi" } ] }, "uniqueItems": true }, "localization": { "description": "Name of the organelle or plasmid this sequence is found in", "enum": [ "mitochondria", "plastid", "chloroplast", "plasmid" ] }, "sequenceFeatures": { "anticodon": { "description": "Information about the anticodon", "$ref": "anticodon.json#" }, "modifications": { "description": "List of the modifications in this sequence", "type": "array", "items": { "$ref": "modification.json#" }, "uniqueItems": true } }, "sourceModel": { "description": "Information about the model used to find this sequence", "$ref" : "global-id.json#/properties/globalId" }, "product": { "description": "The name of the product, this should be more specific than the name of the SO term that was provided", "type": "string" }, "additionalAnnotations": { "isoType": { "description": "The isoType of this tRNA", "enum": [ "Ala", "Cys", "Asp", "Glu", "Phe", "Gly", "His", "Ile", "Lys", "Leu", "iMet", "Met", "Asn", "Pro", "Gln", "Arg", "Ser", "Thr", "Val", "Trp", "Tyr" ] } }, "relatedSequences": { "description": "Information about related sequences, like precursors or targets", "type": "array", "items": { "$ref": "related-sequence.json#" }, "uniqueItems": true }, "inferredPhylogeny": { "description": "A phylogeny that has been inferred for this sequence", "$ref": "inferred-phylogeny.json#" } } }'). ucn(allele_genetic_interactions,[]). ucn(dataset_metadata,[]). ucn(disease_model_annotations,[]). ucn('Dmel_enzyme',[]). ucn(dmel_gene_sequence_ontology_annotations,[]). ucn(dmel_human_orthologs_disease,[]). ucn(dmel_paralogs,[]). ucn(entity_publication,[]). ucn(fbgn_gleanr,[]). ucn(fbgn_NAseq_Uniprot,[]). ucn(fbgn_uniprot,[]). ucn(gene_functional_complementation,[]). ucn(gene_genetic_interactions,[]). ucn(gene_group,[]). ucn(gene_groups_HGNC,[]). ucn(genotype_phenotype,[]). ucn(insertion_mapping,[]). ucn(organism_list,[]). ucn(pathway_group,[]). ucn(pmid_fbgn_uniprot,[]). ucn('scRNA-Seq_gene_expression',[]). ucn(dmel_unique_protein_isoforms, 3). % ,a-PA,)) ucn(best_gene_summary, 1). % ,FBgn0031081,) (2 ,Nep3,)) ucn(cDNA_clone_data, 1). % ,FBcl0000001,) (3 ,UUGC0315,)) ucn(fb_synonym, 1). % ,FBal0000001,)) ucn(fbal_to_fbgn, 1). % ,FBal0137236,)) ucn(fbgn_annotation_ID.tsv, 1). % ,7SLRNA:CR32864,) (3 ,FBgn0000003,) (5 ,CR32864,)) ucn(fbgn_annotation_ID, 1). % ,7SLRNA:CR32864,) (3 ,FBgn0000003,) (5 ,CR32864,)) ucn(fbgn_fbtr_fbpp_expanded, 8). % ,FBtr0081624,) (9 ,7SLRNA:CR32864-RA,)) ucn(fbgn_fbtr_fbpp, 2). % ,FBtr0081624,)) ucn(fbrf_pmid_pmcid_doi, 1). % ,FBrf0026179,) (2 ,37280885,)) ucn(gene_map_table, 2). % ,snRNA:4.5S,) (3 ,FBgn0000001,)) ucn(gene_rpkm_matrix, 1). % ,FBgn0031081,) (2 ,Nep3,)) ucn(gene_rpkm_report,[]). ucn(gene_snapshots, 1). % ,FBgn0052532,) (2 ,CG32532,)) ucn('genome-cyto-seq', 1). % ,21B2,) (2 ,98620,) (3 ,134010,)) ucn('cyto-genetic-seq', 1). % ,1A,)) ucn(genomic_clone, 1). % ,FBcl0297251,) (3 ,BACR13J02,)) ucn(stocks ,1). % ,FBst,)) ucn(physical_interactions_mitab, 14). %,flybase:FBrf0218395-7641.DPiM,)) list_column_names:- for_all((column_names(T,CNs),once((length(CNs,Len),Len>=2,fb_pred_nr(T,Len)))), (print(column_names(T,CNs)),nl)). %:- ensure_loaded(read_obo). show_cmds:- prolog_load_context(source,This),for_all((source_file(P0,This),functor(P0,F,0)),writeln(add_history1(F))). %add_history1(setup_flybase_cols) %add_history1(pmt) ah:- add_history1(fb_stats), add_history1(mine_overlaps), add_history1(load_flybase), add_history(fb_stats), add_history(mine_overlaps), add_history(try_overlaps), add_history(load_flybase). %:- ah,ah,ah. %:- initialization(load_flybase). fb_pred('allele_genetic_interactions',4). fb_pred('automated_gene_summaries',2). fb_pred('automated_gene_summaries',3). fb_pred('best_gene_summary',4). fb_pred('cDNA_clone_data',6). fb_pred('cDNA_clone_data',5). fb_pred('cDNA_clone_data',6). fb_pred('cyto_genetic_seq',4). fb_pred('cyto-genetic-seq',4). fb_pred('dataset_metadata',4). fb_pred('directory',2). fb_pred('disease_model_annotations',12). fb_pred('disease_model_annotations',9). fb_pred('Dmel_enzyme',11). fb_pred('Dmel_enzyme_data',11). fb_pred('Dmel_enzyme_data',7). fb_pred('dmel_gene_sequence_ontology_annotations',4). fb_pred('dmel_human_orthologs_disease',8). fb_pred('dmel_paralogs',11). fb_pred('dmel_unique_protein_isoforms',4). fb_pred('entity_publication',3). fb_pred('entity_publication',4). fb_pred('fb_synonym',4). fb_pred('fb_synonym',6). fb_pred('fbal_to_fbgn',4). fb_pred('fbgn_annotation_ID',4). fb_pred('fbgn_annotation_ID',6). fb_pred('fbgn_exons2affy1_overlaps',2). fb_pred('fbgn_exons2affy2_overlaps',2). fb_pred('fbgn_fbtr_fbpp',2). fb_pred('fbgn_fbtr_fbpp',3). fb_pred('fbgn_fbtr_fbpp_expanded',11). fb_pred('fbgn_fbtr_fbpp_expanded',9). fb_pred('fbgn_gleanr',4). fb_pred('fbgn_NAseq_Uniprot',4). fb_pred('fbgn_NAseq_Uniprot',9). fb_pred('fbgn_uniprot',4). fb_pred('fbrf_pmid_pmcid_doi',2). fb_pred('fbrf_pmid_pmcid_doi',6). fb_pred('fbrf_pmid_pmcid_doi',7). fb_pred('gene_functional_complementation',5). fb_pred('gene_genetic_interactions',6). fb_pred('gene_group',7). fb_pred('gene_group_data',2). fb_pred('gene_group_data',7). fb_pred('gene_groups_HGNC',2). fb_pred('gene_groups_HGNC',3). fb_pred('gene_groups_HGNC',4). fb_pred('gene_map_table',5). fb_pred('gene_map_table',6). fb_pred('gene_rpkm_matrix',170). fb_pred('gene_rpkm_report',12). fb_pred('gene_snapshots',5). fb_pred('genome_cyto_seq',3). fb_pred('genome-cyto-seq',3). fb_pred('genomic_clone',4). fb_pred('genomic_clone_data',4). fb_pred('genotype_phenotype',7). fb_pred('genotype_phenotype_data',5). fb_pred('genotype_phenotype_data',7). fb_pred('gp_information',10). fb_pred('gp_information',8). fb_pred('id_type',2). fb_pred('insertion_mapping',4). fb_pred('insertion_mapping',7). fb_pred('obo-adjacent-to',3). fb_pred('obo-alt-id',2). fb_pred('obo-arity',2). fb_pred('obo-attached-to',3). fb_pred('obo-attached-to-part-of',3). fb_pred('obo-auto-generated-by',2). fb_pred('obo-basename',2). fb_pred('obo-broadMatch',2). fb_pred('obo-charge',2). fb_pred('obo-ChEBI-has-part',2). fb_pred('obo-ChEBI-has-role',2). fb_pred('obo-CL-capable-of',2). fb_pred('obo-CL-capable-of-part-of',2). fb_pred('obo-CL-has-part',2). fb_pred('obo-closeMatch',2). fb_pred('obo-comment',2). fb_pred('obo-composed-primarily-of',3). fb_pred('obo-conditionality',3). fb_pred('obo-connected-to',3). fb_pred('obo-consider',2). fb_pred('obo-contains',3). fb_pred('obo-continuous-with',3). fb_pred('obo-created-by',2). fb_pred('obo-creation-date',2). fb_pred('obo-data-version',2). fb_pred('obo-date',2). fb_pred('obo-def',3). fb_pred('obo-def',4). fb_pred('obo-default-namespace',2). fb_pred('obo-derives-from',3). fb_pred('obo-develops-directly-from',3). fb_pred('obo-develops-from',3). fb_pred('obo-develops-from-part-of',3). fb_pred('obo-develops-into',3). fb_pred('obo-directory',2). fb_pred('obo-disjoint-from',3). fb_pred('obo-electrically-synapsed-to',3). fb_pred('obo-exactMatch',2). fb_pred('obo-fasciculates-with',3). fb_pred('obo-FBcv-namespace',2). fb_pred('obo-format-version',2). fb_pred('obo-formula',2). fb_pred('obo-GO-capable-of',2). fb_pred('obo-GO-capable-of-part-of',2). fb_pred('obo-GO-directly-negatively-regulates',2). fb_pred('obo-GO-directly-positively-regulates',2). fb_pred('obo-GO-directly-regulates',2). fb_pred('obo-GO-has-part',2). fb_pred('obo-GO-has-participant',2). fb_pred('obo-GO-negatively-regulates',2). fb_pred('obo-GO-occurs-in',2). fb_pred('obo-GO-positively-regulates',2). fb_pred('obo-GO-regulates',2). fb_pred('obo-GO-results-in-formation-of',2). fb_pred('obo-GO-results-in-growth-of',2). fb_pred('obo-guided-by',3). fb_pred('obo-has-definition',2). fb_pred('obo-has-fasciculating-neuron-projection',3). fb_pred('obo-has-functional-parent',2). fb_pred('obo-has-name',2). fb_pred('obo-has-origin',3). fb_pred('obo-has-parent-hydride',2). fb_pred('obo-has-part',2). fb_pred('obo-has-part',3). fb_pred('obo-has-quality',3). fb_pred('obo-has-role',2). fb_pred('obo-has-sensory-dendrite-in',3). fb_pred('obo-has-soma-location',3). fb_pred('obo-has-synaptic-IO-in',3). fb_pred('obo-has-synaptic-IO-throughout',3). fb_pred('obo-holds-over-chain',2). fb_pred('obo-id-type',2). fb_pred('obo-immediately-preceded-by',3). fb_pred('obo-inchi',2). fb_pred('obo-inchikey',2). fb_pred('obo-Inheritance',2). fb_pred('obo-innervated-by',3). fb_pred('obo-innervates',3). fb_pred('obo-intersection-of',4). fb_pred('obo-inverse-of',2). fb_pred('obo-inverse-of',3). fb_pred('obo-is-a',2). fb_pred('obo-is-class-level',2). fb_pred('obo-is-conjugate-acid-of',2). fb_pred('obo-is-conjugate-base-of',2). fb_pred('obo-is-cyclic',2). fb_pred('obo-is-enantiomer-of',2). fb_pred('obo-is-functional',2). fb_pred('obo-is-inverse-functional',2). fb_pred('obo-is-metadata-tag',2). fb_pred('obo-is-obsolete',2). fb_pred('obo-is-substituent-group-from',2). fb_pred('obo-is-symmetric',2). fb_pred('obo-is-tautomer-of',2). fb_pred('obo-is-transitive',2). fb_pred('obo-mass',2). fb_pred('obo-member-of',3). fb_pred('obo-monoisotopicmass',2). fb_pred('obo-name',2). fb_pred('obo-namespace',2). fb_pred('obo-namespace-id-rule',2). fb_pred('obo-narrowMatch',2). fb_pred('obo-negatively-regulates',3). fb_pred('obo-non-functional-homolog-of',3). fb_pred('obo-OBI:9991118',2). fb_pred('obo-ontology',2). fb_pred('obo-overlaps',3). fb_pred('obo-owl:versionInfo',2). fb_pred('obo-part-of',3). fb_pred('obo-pathname',2). fb_pred('obo-positively-regulates',3). fb_pred('obo-property-value',2). fb_pred('obo-property-value',3). fb_pred('obo-receives-input-from',3). fb_pred('obo-receives-synaptic-input-from-neuron',3). fb_pred('obo-receives-synaptic-input-in-region',3). fb_pred('obo-receives-synaptic-input-throughout',3). fb_pred('obo-regulates',3). fb_pred('obo-relatedMatch',2). fb_pred('obo-remark',2). fb_pred('obo-replaced-by',2). fb_pred('obo-RO',4). fb_pred('obo-saved-by',2). fb_pred('obo-sends-synaptic-output-throughout',3). fb_pred('obo-sends-synaptic-output-to-cell',3). fb_pred('obo-sends-synaptic-output-to-region',3). fb_pred('obo-smiles',2). fb_pred('obo-subset',2). fb_pred('obo-subsetdef',3). fb_pred('obo-substage-of',3). fb_pred('obo-synapsed-via-type-Ib-bouton-to',3). fb_pred('obo-synapsed-via-type-II-bouton-to',3). fb_pred('obo-synapsed-via-type-III-bouton-to',3). fb_pred('obo-synapsed-via-type-Is-bouton-to',3). fb_pred('obo-synonym',3). fb_pred('obo-synonym',4). fb_pred('obo-synonym',5). fb_pred('obo-synonymtypedef',3). fb_pred('obo-synonymtypedef',4). fb_pred('obo-transcribed-from',3). fb_pred('obo-transcribed-to',3). fb_pred('obo-transitive-over',3). fb_pred('obo-variant-of',3). fb_pred('obo-xref',2). fb_pred('obo-xref',3). fb_pred('obo-xref',4). fb_pred('obo-xref-analog',2). fb_pred('organism_list',2). fb_pred('organism_list',6). fb_pred('pathname',2). fb_pred('pathway_group',7). fb_pred('pathway_group_data',2). fb_pred('pathway_group_data',7). fb_pred('physical_interactions_mitab',42). fb_pred('pmid_fbgn_uniprot',5). fb_pred('stocks',7). fb_pred('stocks_FB2023_05',7). fb_pred('synonym',6). fb_pred('transposon_sequence_set',10). fb_pred('transposon_sequence_set',11). fb_pred('transposon_sequence_set',12). fb_pred('transposon_sequence_set',13). fb_pred('transposon_sequence_set',14). fb_pred('transposon_sequence_set',15). fb_pred('transposon_sequence_set',17). fb_pred('transposon_sequence_set',18). fb_pred('transposon_sequence_set',19). fb_pred('transposon_sequence_set',20). fb_pred('transposon_sequence_set',21). fb_pred('transposon_sequence_set',22). fb_pred('transposon_sequence_set',23). fb_pred('transposon_sequence_set',25). fb_pred('transposon_sequence_set',26). fb_pred('transposon_sequence_set',27). fb_pred('transposon_sequence_set',28). fb_pred('transposon_sequence_set',29). fb_pred('transposon_sequence_set',3). fb_pred('transposon_sequence_set',30). fb_pred('transposon_sequence_set',31). fb_pred('transposon_sequence_set',32). fb_pred('transposon_sequence_set',33). fb_pred('transposon_sequence_set',34). fb_pred('transposon_sequence_set',35). fb_pred('transposon_sequence_set',36). fb_pred('transposon_sequence_set',37). fb_pred('transposon_sequence_set',38). fb_pred('transposon_sequence_set',4). fb_pred('transposon_sequence_set',40). fb_pred('transposon_sequence_set',41). fb_pred('transposon_sequence_set',42). fb_pred('transposon_sequence_set',44). fb_pred('transposon_sequence_set',45). fb_pred('transposon_sequence_set',46). fb_pred('transposon_sequence_set',47). fb_pred('transposon_sequence_set',48). fb_pred('transposon_sequence_set',49). fb_pred('transposon_sequence_set',5). fb_pred('transposon_sequence_set',50). fb_pred('transposon_sequence_set',51). fb_pred('transposon_sequence_set',52). fb_pred('transposon_sequence_set',53). fb_pred('transposon_sequence_set',54). fb_pred('transposon_sequence_set',55). fb_pred('transposon_sequence_set',56). fb_pred('transposon_sequence_set',57). fb_pred('transposon_sequence_set',58). fb_pred('transposon_sequence_set',59). fb_pred('transposon_sequence_set',60). fb_pred('transposon_sequence_set',61). fb_pred('transposon_sequence_set',62). fb_pred('transposon_sequence_set',7). fb_pred('transposon_sequence_set',8). fb_pred('transposon_sequence_set',9). % ============== % METTA COMPILER % ============== %:- ensure_loaded(metta_compiler). :- ensure_loaded(library(metta_interp)). %:- ensure_loaded(metta_python). ping_file_loaders:- expand_file_name('library/*/ext_loader_*.pl',List), maplist(absolute_file_name,List,AList), maplist(ensure_loaded,AList). :- ping_file_loaders.